Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq30666 1227 0.0 seq30665 383 6e-103 >seq30666 Length=2127 Score = 1227 bits (1360), Expect = 0.0 Identities = 1380/1835 (75%), Gaps = 15/1835 (1%) Strand=Plus/Plus Query 608 CGACCCCTTAAAGATATCCGCGCCGATTACAACTATGCAAAGGCTAAGGGTGTTAAAGAT 667 || || ||||| ||||| |||| || || || || | || || ||| |||| ||| Sbjct 32 CGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGAT 91 Query 668 GAGTGCTCAAAAATCTTGGAGGAGTCAACTATGAAGTCTCGACGTGGCTTTACCGTTCAA 727 ||||| |||| | | |||||| || |||||||| || || | |||||| | |||| Sbjct 92 GAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAG 151 Query 728 AGATTAATGAATGCTATGCGTACTGCCCATTCTAAGGGCTGGTATGTCGTATTCGATACT 787 | || |||||||| ||||| || ||| || | || |||| | | || || || ||| Sbjct 152 CGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATAGTTTTTGACACT 211 Query 788 CTTACTCTAGCCGATGACCGCTTAAAGGATTTCTATGATAATCCCAATGCTCTTCGTGAC 847 || || | || || ||||| ||| ||| || |||||||||||||||||| | |||||| Sbjct 212 CTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGAC 271 Query 848 TACTTCCGTGATATTGGTCGTATGGTGCTTACTGCCGAAGGTCGCTCGGTGCATGACTCA 907 || || |||||||||||||||||||| ||| ||||||| |||||| || |||| ||| Sbjct 272 TATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCA 331 Query 908 TCTTCCGACTGCTATCAGTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTA 967 |||||||||||||||||||||||||||| |||||||||||| | || ||||| Sbjct 332 CACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTT 391 Query 968 CATTTCCACGCAGTGCATCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTC 1027 |||||||| || ||||| ||||||| ||||||||| ||| | ||||||| || Sbjct 392 CATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTT 451 Query 1028 GGTAAGCTGGTACGCATCAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGT 1087 ||| | |||||||| || || |||||||||||||||| ||||||||||||||| Sbjct 452 GGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGT 511 Query 1088 TACTCTATGCCCATCGCAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTC 1147 ||| ||||||||||||||| || ||| | || ||||| || || || |||| ||| | Sbjct 512 TACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTG 571 Query 1148 TGGCCTGTGGACTCAAAGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTC 1207 |||||||| || | || ||||| || |||||||||||| ||||||||||| |||||| Sbjct 572 TGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGCTTC 631 Query 1208 TACGTTGCTAAATACGTTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGG 1267 || || |||||||||||||||||||| |||||||| ||| | || | ||||| ||||| Sbjct 632 TATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGA 691 Query 1268 AATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTC 1327 ||||||||||||||| ||||| |||||||| | || | |||||||| ||||| Sbjct 692 GCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTC 751 Query 1328 AGAATACGAATGTCTCGCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCG 1387 ||||| ||||| ||||| ||||| |||||| || | ||||| | | ||||| || Sbjct 752 AGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACG 811 Query 1388 GAAACCCTGATGGAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTG 1447 || | | || |||| ||| | |||||||||||| ||| ||||||||| | || ||| Sbjct 812 GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTG 871 Query 1448 AAGCAGAACGCCAAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTT 1507 ||||||||||| || | |||| | | || |||||||| ||| |||| ||||||||| Sbjct 872 AAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTT 931 Query 1508 TTGGAGGCGCAACCTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACA 1567 |||| |||||||||||||||||| |||||||| ||||| |||||| || || || Sbjct 932 TTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATG 991 Query 1568 ATCGGAGCGTCCAACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACG 1627 || || | |||||||| ||||||||||||||||| ||||| ||| |||||| | || Sbjct 992 ATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCG 1051 Query 1628 GATATTTCTGATGAAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTA 1687 |||||||||||||| | ||||| || ||| | ||||||||| || |||| ||| Sbjct 1052 GATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTA 1111 Query 1688 CGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAA 1747 |||||||||||||||||||||||||| |||||||||| |||||| | || ||| | Sbjct 1112 CGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCA 1171 Query 1748 ACTCGAGGTCGTCTTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACT 1806 |||||| ||||||||||| |||||||||||||| || |||| | ||| |||||||| Sbjct 1172 GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACT 1230 Query 1807 GACGCCCTTGACGAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTC 1866 ||||| | || |||||||| | | |||||| | || | || ||||||||||||| Sbjct 1231 GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTT 1290 Query 1867 CGGTACGAAGAACATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGT 1926 | || || |||||| || ||||||| | | || | ||||||| | ||||| ||| Sbjct 1291 AGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGT 1350 Query 1927 GGCCTATTATCCACATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAA 1984 || || |||| || ||| |||||| | ||| || ||||| | | Sbjct 1351 GGATTACTATCTGAGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAG 1405 Query 1985 TCAA---AC-GAATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCA 2040 |||| || ||| | ||| || || || ||| | || ||||| || || ||||| Sbjct 1406 TCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCA 1465 Query 2041 AGCATCTTCTGTTCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGT 2100 || ||| | ||| | || || || || || ||||| || || | || | || || Sbjct 1466 GGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGT 1525 Query 2101 CTGGATTGCTACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAA 2159 ||||||||||| ||||| || || ||||| || ||| | ||||||||||| ||||| | Sbjct 1526 TTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTA 1584 Query 2160 CACTGGACTTTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCA 2219 | ||||||||||| || || |||||||||||||||||||||||||||||| ||||||||| Sbjct 1585 CGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCA 1644 Query 2220 TTGCTTATTACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTG 2279 |||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| |||| Sbjct 1645 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 1704 Query 2280 AGTTTACCGAAAACATCGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCG 2339 | ||||| |||||||| | ||||| || || || || ||||||||| ||||| |||||| Sbjct 1705 AATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCG 1764 Query 2340 CCTTCACTCTTCTTGTTCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACA 2399 | || || | | ||| ||||| ||||||| || || | | |||| ||| |||| Sbjct 1765 CGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACG 1824 Query 2400 TCCGTGAACAGTTACGCGCTCAAGGTGTCATGTAA 2434 | ||| || | ||||| || |||| || |||||| Sbjct 1825 TGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAA 1859 >seq30665 Length=3289 Score = 383 bits (424), Expect = 6e-103 Identities = 669/964 (69%), Gaps = 32/964 (3%) Strand=Plus/Plus Query 2711 GCTGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGT 2770 ||||| ||||| |||||| || ||||||||| | ||||| || || | |||||| Sbjct 27 GCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGT 86 Query 2771 GGCCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATC 2830 ||||| ||| ||||||| || || || ||| |||| ||| |||| || ||||| | Sbjct 87 GGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTT 146 Query 2831 TACGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCT 2890 || ||| | ||||||||||| || ||||||||||| ||||||||| | ||||| || || Sbjct 147 TATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACT 206 Query 2891 GTTACATGCTCCTCTGGTTGG---GACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCT 2947 |||| | | |||||| ||| ||| |||| ||| || || ||| || | Sbjct 207 GTTAA---CACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGAT 263 Query 2948 ACCCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTC 3007 ||| |||| | ||||| || |||||| ||| ||||||| ||||| ||||| || Sbjct 264 ACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTT 323 Query 3008 AAACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCTTCTGA 3063 ||| |||| ||| ||| || | | ||| |||||||| ||| || | | | Sbjct 324 AAAGCGCCGTGG----ATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTAATCA 376 Query 3064 GGATTATAAATGG---GGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACT 3120 ||| || | || | ||| | | || ||| || |||||||| || || Sbjct 377 AGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCT 436 Query 3121 TCCACCGGATACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTAT 3180 ||| || || ||| ||| | ||||| ||| ||| | ||||||||||||| Sbjct 437 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTAT 496 Query 3181 GGGCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGAC 3240 ||| || ||||| || || ||||| || ||||| || || |||||||||||||||||| Sbjct 497 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCA 556 Query 3241 CCGTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCG 3300 ||||||| ||| |||| || || ||| | || || ||||| | |||||| || Sbjct 557 GCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCG 616 Query 3301 TCCTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGA 3360 |||| | || ||||||||||| | | ||||||||||||||||| || || || ||||| Sbjct 617 TCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGA 676 Query 3361 CCAATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCC 3420 |||| | || | || || || |||||||| ||||| ||||||| || || || || Sbjct 677 CCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCC 736 Query 3421 ACGCTTCTATGTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCC 3480 || |||| ||||||||||||| || || | ||||| ||| || ||| |||||||| Sbjct 737 GCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCC 796 Query 3481 TACT--CATGAAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGAT 3538 |||| | ||| || || || || ||| | ||||| || |||||||||||| Sbjct 797 TACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGAT 854 Query 3539 ATTGCTTGTGACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAAAGA 3597 |||||| | ||||||| || ||||| ||| |||| || |||||| | || | || || Sbjct 855 ATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGA 913 Query 3598 ATTCTTCCACTCCTCACCCGATTCTGCT---AAATTCAAAATCGCTGAGGGCCAATGGTA 3654 | |||| || |||||| || || || || || |||||||| || ||||| Sbjct 914 TGTTTTCC---GTTCTGGCGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTA 970 Query 3655 TCGT 3658 ||| Sbjct 971 CCGT 974 Score = 159 bits (176), Expect = 1e-35 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 2392 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 2451 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 2452 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 2511 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| ||||| |||||||| |||||||| || ||||| ||| Sbjct 2512 CAGCAGGTTTCCGAGATTATGCGCCAAATACTTACTCAAGCTCAAACGGCTGGTCAGTAT 2571 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 2572 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 2624 Score = 156 bits (172), Expect = 1e-34 Identities = 323/481 (67%), Gaps = 15/481 (3%) Strand=Plus/Plus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 1845 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 1904 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 1905 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 1964 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1965 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 2024 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCTCTGCTATCTCTGGCATCCTTGCCGACTCTGG 4802 ||| |||||| || | || || || || | | | ||||| | || | |||| Sbjct 2025 TGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGG 2084 Query 4803 -CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCAT 4850 ||| | | || | | || || ||| | | | |||| | | Sbjct 2085 TAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCT 2144 Query 4851 GGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACTA 4907 || || || ||| | ||||||||| |||| || || ||||| || || || Sbjct 2145 TGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTA 2204 Query 4908 TCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTAG 4967 ||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 2205 TCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTC 2264 Query 4968 TCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTGA 5027 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || || Sbjct 2265 TGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGA 2324 Query 5028 C 5028 | Sbjct 2325 C 2325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17725775317920