Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq1336 116 2e-22 >seq1336 Length=3977 Score = 116 bits (128), Expect = 2e-22 Identities = 151/189 (80%), Gaps = 16/189 (8%) Strand=Plus/Minus Query 5405 CCTTTAATCGGCCTCCTGTTTAGCTCCCGCTCTGATTCCAACGAGGAAAGCACGTTATAC 5464 ||||||| ||||||||||| ||| |||| ||| ||| ||| || |||||| |||| Sbjct 3977 CCTTTAA-CGGCCTCCTGTA-AGC-CCCGTTCT-ATTA-AACAAG-AAAGCAG--TATAG 3926 Query 5465 GTGCTCGTCAAAGCAACCATAGTACGCGCCCTGTAGCGGCGCATTAAGCGCGGC-GGGTG 5523 | | | |||||| || | |||| ||| || ||||||||| | |||||| |||| ||||| Sbjct 3925 G-GTTGGTCAAACCA-CTTTAGT-CGCCCCTTGTAGCGGCCCTTTAAGC-CGGCTGGGTG 3870 Query 5524 TGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCG-CCCTAGCGCCCG-CTCCTTT 5581 ||||| | |||| |||||| ||||| ||||||| |||| |||||||| ||| ||||||| Sbjct 3869 TGGTGTTAACGCCAAGCGTG-CCGCTCCACTTGCAAGCGGCCCTAGCGGCCGGCTCCTTT 3811 Query 5582 CGCTTTCTT 5590 ||||||||| Sbjct 3810 CGCTTTCTT 3802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20377001914816