Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq30665 581 1e-162 seq30666 381 2e-102 >seq30665 Length=3289 Score = 581 bits (644), Expect = 1e-162 Identities = 859/1211 (71%), Gaps = 22/1211 (2%) Strand=Plus/Plus Query 3157 TTTCATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGC 3216 ||||| ||||| ||||| |||||||| ||||| ||| | || || ||||||||| | | Sbjct 7 TTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC 66 Query 3217 GTCTTTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCT 3276 |||||||||| |||||||||| | ||||||||||||| || || |||| ||||| | Sbjct 67 GTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTT 126 Query 3277 ATATTCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTG 3336 || | || ||||| || ||||||||||| ||||||||| | || ||| ||||||||| Sbjct 127 ATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTA 186 Query 3337 ATGCCGCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTG 3396 ||||| | || ||||| | |||| |||||| ||| || | || | || | ||| Sbjct 187 ATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTG 246 Query 3397 GTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATA 3456 | || ||| ||| | | ||| || |||||| |||| |||| |||| |||||| Sbjct 247 GCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATA 306 Query 3457 TTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAA 3516 | ||||| |||||||| ||||||||||||||||| ||||| || ||||| ||| | Sbjct 307 TCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---A 363 Query 3517 AT----TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATT 3572 || ||| | | |||||| |||| ||||| ||||||||||||||||| |||| ||| Sbjct 364 ATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATT 422 Query 3573 TGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAAT 3632 ||| ||||||| |||||||| || ||| |||| || |||||| | | | || Sbjct 423 TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACA 482 Query 3633 TCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGT 3692 || ||||| ||||||||| |||| || |||||||| | | |||||||| || || ||| Sbjct 483 TCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGT 542 Query 3693 ACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTAT 3752 ||| |||||||||||||| | ||||||||| || ||||| ||| |||||| ||| Sbjct 543 GATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTAT 602 Query 3753 GATGCCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGAC 3812 || || || ||||| || || ||||| |||| | | || ||||||| || || || || Sbjct 603 GACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGAT 662 Query 3813 GTTGACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTT 3872 ||||| || || |||||| | || | || |||||||| ||||| || |||||||| | | Sbjct 663 GTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTAT 722 Query 3873 AAACACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTG 3932 ||||| || ||||| || ||||| || || |||||||| ||| | ||| | ||| Sbjct 723 AAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTT 782 Query 3933 GTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTG 3992 ||||| || ||||||| || ||| ||| || ||| | | | |||| Sbjct 783 GTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTG 842 Query 3993 ACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATT 4052 ||||||||||| |||| || ||||| | |||| ||| || |||||||| ||||| ||| Sbjct 843 ACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT 902 Query 4053 TCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCT 4112 ||| ||||| |||||||| ||| | || | ||| ||||| |||| ||| | Sbjct 903 TCTATGAAGGATGTTTTCCGTTCTGGCGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGT 962 Query 4113 ATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTT 4171 ||||| ||| | || |||||| || | ||||| | |||||||| || Sbjct 963 CAGTGGTACCGTTATGCGCCCTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTT 1021 Query 4172 TCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCT 4231 || ||| || | || ||| || ||||||| | |||| || | || Sbjct 1022 CCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACT 1069 Query 4232 CATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAA 4291 ||| ||| |||| ||| | ||||||||||| |||||| | |||||||||| Sbjct 1070 TATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAG 1129 Query 4292 TCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTAT 4351 ||||| | | |||||| | |||||||| || | || || ||| ||||| || || Sbjct 1130 TCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCAT 1189 Query 4352 GACCTCTTGAT 4362 ||| || |||| Sbjct 1190 GACTTCGTGAT 1200 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 2184 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 2243 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 2244 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 2298 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 2299 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 2357 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 2358 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 2416 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 2417 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 2476 Query 5762 CGTCCAT 5768 |||| || Sbjct 2477 CGTCTAT 2483 >seq30666 Length=2127 Score = 381 bits (422), Expect = 2e-102 Identities = 489/671 (73%), Gaps = 51/671 (8%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 1462 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1521 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 1522 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1581 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 1582 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1641 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 1642 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1701 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 1702 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 1761 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 1762 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 1821 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970 | | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| |||| Sbjct 1822 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 1880 Query 2971 ----CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTG 2995 || || ||| ||||| |||||||| | Sbjct 1881 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 1940 Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGC--TCTTT 3053 | || |||||||||||||| ||| || |||||||| | |||||| | | || Sbjct 1941 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 2000 Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112 |||| ||||| ||||||||| | |||||| ||| || ||| ||||||||| Sbjct 2001 GAGGATAAATT--ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 2058 Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170 ||||||| ||| | ||| | || |||||||||| | | || ||||| ||||| Sbjct 2059 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 2116 Query 3171 GTTATTGCTGG 3181 ||||| ||||| Sbjct 2117 GTTATCGCTGG 2127 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 188 GGTTGGTTTATAGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 247 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 248 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 307 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 308 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 367 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 368 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 425 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 426 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 484 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 485 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 544 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 545 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19375902935168