Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_022002.1 Length=3206 Score E Sequences producing significant alignments: (Bits) Value seq842 109 1e-20 >seq842 Length=2574317 Score = 109 bits (120), Expect = 1e-20 Identities = 183/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 1977 ATTGCATCATAGTAAGAGTTATCTGGATTACAAAGAACAATTGATGGGATCCCTCCTTTG 2036 || ||||||||||| ||| ||| | |||||| |||||||| || || || |||||||| Sbjct 883902 ATAGCATCATAGTATGAGGCATCCGAATTACAGAGAACAATAGACGGTATGCCTCCTTTA 883843 Query 2037 ATTTTCCGCTTTGGACGATATTTTTCATTTGCAATGTAATTGAATTGACAACCTAATAAG 2096 |||| || ||| ||| ||||| |||||| ||| || | ||| || | || | Sbjct 883842 ATTTGGCGTTTTTTACGGTATTTCTCATTTACAACATACTCCCTTTGGGCCCCAAGTAGG 883783 Query 2097 GCTTTTTTACAAGGCAAATATTGGAATGGTATATCGTCAATAATATTGTACAAAGCGTCG 2156 || |||||||| ||||||||||| ||||| ||| || || | ||| || || || Sbjct 883782 GCCTTTTTACATGGCAAATATTGAAATGGACAATCATCTATTACATTATATTGGGCCTC- 883724 Query 2157 TCTATGTATAGACTG---AAGTCTACTGATTCACACCAGTAGTTATGTATTCCCAATGAT 2213 | || |||| | || || || || ||| | |||||||||||| ||||| | Sbjct 883723 TACAT-TATA-ATTGGTAAAATCAACGCCTTCGGCCTAGTAGTTATGTAAGCCCAAACTT 883666 Query 2214 ATAGCCCATTGCGTTTTACC 2233 | ||||| || |||||||| Sbjct 883665 CTGGCCCAGTGTGTTTTACC 883646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10147061157765