Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_030238.1 Length=2683 Score E Sequences producing significant alignments: (Bits) Value seq842 96.9 6e-17 >seq842 Length=2574317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 174/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 1362 TTAGCTAGAGCAATCCTA-TAGGATTGATCGGGATTGCACAATATAATTGTTGGAATCCC 1420 ||||| | |||| || || || || ||| | ||| || | | ||| | || || || Sbjct 883908 TTAGCAATAGCA-TCATAGTATGAGGCATCCGAATTACAGAGAACAATAGACGGTATGCC 883850 Query 1421 TCCTTTAATCCTAGtttttttACGGTATTTTTCATTTACCGTAAAATCTTTCTGACAGCC 1480 ||||||||| ||||||||||||||| |||||||| | | || | || || Sbjct 883849 TCCTTTAATTTGGCGTTTTTTACGGTATTTCTCATTTACAACATACTCCCTTTGGGCCCC 883790 Query 1481 TAGTAATTCTTTTTTACAAGGTAAATACTGGAACGGAATATCATCAATTACATTATACAA 1540 |||| | |||||||| || ||||| || || ||| |||||| ||||||||||| Sbjct 883789 AAGTAGGGCCTTTTTACATGGCAAATATTGAAATGGACAATCATCTATTACATTATATTG 883730 Query 1541 AGCAAATACATCATAATTACTAAAGTCAACCCCTCCACAGTAATAGTTGTGTCTTCCAAG 1600 || ||||| |||||| |||| ||||| ||| | || ||||| ||| || | Sbjct 883729 GGCCTCTACATTATAATTGGTAAAATCAACGCCTTCGGCCTAGTAGTTATGTAAGCCCAA 883670 Query 1601 GCTTCTGGCCCA 1612 ||||||||||| Sbjct 883669 ACTTCTGGCCCA 883658 Score = 77.0 bits (84), Expect = 6e-11 Identities = 137/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1413 GGAATCCCTCCTTTAATCCTAGtttttttACGGTATTTTTCATTTACCGTAAAATCTTTC 1472 || || |||||| |||| ||||||||||||| | |||||||| | | || | Sbjct 894392 GGTATACCTCCTGTAATTTGGCGTTTTTTACGGTATCTCTCATTTACAACATACTCCCTT 894333 Query 1473 TGACAGCCTAGTAATTCTTTTTTACAAGGTAAATACTGGAACGGAATATCATCAATTACA 1532 || || |||| | |||||||| || |||| || || ||| |||||| |||||| Sbjct 894332 TGGGCCCCAAGTAGGGCCTTTTTACATGGAAAATGTTGAAATGGACAATCATCTATTACA 894273 Query 1533 TTATACAAAGCAAATACATCATAATTACTAAAGTCAACCCCTCCACAGTAATAGTTGTGT 1592 ||||| | || ||||| |||||| |||| ||||| ||| | ||||| ||| Sbjct 894272 TTATATTAGGCCTTTACATTATAATTGGTAAAATCAACGCCTTTGGCCCATTAGTTATGT 894213 Query 1593 CTTCCAAGGCTTCTGGCCCA 1612 || | ||||||||||| Sbjct 894212 AAGCCTAAACTTCTGGCCCA 894193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8476687327434