Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_001420.2
Length=5577
Score E
Sequences producing significant alignments: (Bits) Value
seq34586 659 0.0
seq31726 452 1e-123
>seq34586
Length=1708
Score = 659 bits (730), Expect = 0.0
Identities = 1113/1596 (70%), Gaps = 49/1596 (3%)
Strand=Plus/Plus
Query 2006 TTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACA 2065
|| || || ||| | || ||||| || || ||||| || ||| | ||| | || || ||
Sbjct 87 TTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACC 146
Query 2066 GAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGC 2125
|| || ||||| || || | || | || || ||||||||||| ||||| || ||
Sbjct 147 GAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 206
Query 2126 GCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCG 2184
||||| || ||| | ||||||||||| ||||| || ||||||||||| || || |||||
Sbjct 207 GCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCG 265
Query 2185 CTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAA 2244
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 266 CTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAA 325
Query 2245 CATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGG 2304
||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| | |||||
Sbjct 326 CATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGG 385
Query 2305 TGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGG 2364
|| || || || ||||||||| ||||| ||||||| || || | | ||| ||||| ||
Sbjct 386 CGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGG 445
Query 2365 AAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGG 2424
||||| || || | | |||| ||| |||| | ||| || | ||||| || ||||
Sbjct 446 AAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGG 505
Query 2425 TGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT----ATGTAATGA 2480
|| |||||| | | | | || | || || | | ||
Sbjct 506 AGTGATGTAATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTC 557
Query 2481 AAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCG 2540
| | | || | || ||||| ||| || || ||||| ||||||||||| |
Sbjct 558 CGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTG 617
Query 2541 GAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAA 2600
| ||||| ||| || | ||| | ||| ||| || || |||||| || |
Sbjct 618 GTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGGATA-AATTA 668
Query 2601 TGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACCTTGTCTTTG 2660
||||||| ||||||| || || ||| | || |||||| | || || |||| |||
Sbjct 669 TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCC 728
Query 2661 AGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACT 2720
|||||| | ||||| || || | || || || || || | | ||||| ||||
Sbjct 729 TTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACT 788
Query 2721 CTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTG 2780
| |||||| || ||||||||| | ||||| || || | ||||||||||| |||
Sbjct 789 CCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTA 848
Query 2781 TTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGC 2840
||||||| || || || ||| |||| ||| |||| || ||||| | || ||| | |
Sbjct 849 TTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAAC 908
Query 2841 AGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCT 2900
|||||||||| || ||||||||||| ||||||||| | ||||| || |||||| |
Sbjct 909 AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACA 965
Query 2901 CCTCTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAG 2957
| |||||| ||| ||| |||| ||| || || ||| || |||| ||||
Sbjct 966 CTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAA 1025
Query 2958 TGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTT 3017
| ||||| || |||||| ||| ||||||| ||||| ||||| || ||| |||| |
Sbjct 1026 TCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT 1085
Query 3018 GGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TGAGGATTAT 3070
| |||| || | | ||| ||||||| | ||| || | || || ||| |
Sbjct 1086 G----GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCT 1138
Query 3071 AAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGAT 3130
| || | ||| | | || ||| || |||||||| || ||||| || ||
Sbjct 1139 CGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAG 1198
Query 3131 ACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAA 3190
||| ||| | ||||| ||| ||| | |||||||||||||||| || |||
Sbjct 1199 ACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAA 1258
Query 3191 GCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGT 3250
|| || || ||||| || ||||| || || |||||||||||||||||| ||||||| |
Sbjct 1259 GCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCAT 1318
Query 3251 GACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTG 3310
|| |||| || || ||| | || || ||||| | |||||| |||||| | ||
Sbjct 1319 GATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTT 1378
Query 3311 CTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCT 3370
||||||||||| | | ||||||||||||||||| || || || ||||||||| | ||
Sbjct 1379 GTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCG 1438
Query 3371 CTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTAT 3430
| || || || |||||||| ||||| ||||||| || || || || || |||| |
Sbjct 1439 TTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTT 1498
Query 3431 GTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATG 3488
|||||||||||| || || | ||||| ||| || ||| |||||||||||| |
Sbjct 1499 GTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACT 1558
Query 3489 AAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTG 3548
||| || || || || ||| | ||||| || |||||||||||||||||| | |
Sbjct 1559 AAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCG 1616
Query 3549 ACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAA 3583
|||||| || ||||| ||| |||| || ||||||
Sbjct 1617 ACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAA 1651
>seq31726
Length=1962
Score = 452 bits (500), Expect = 1e-123
Identities = 556/757 (73%), Gaps = 2/757 (0%)
Strand=Plus/Plus
Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521
|||| || |||||| | ||||||| | |||||| ||||||||||||||||||||||
Sbjct 1207 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1266
Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581
|||||||| ||| || | || | ||| | | || || | || |||
Sbjct 1267 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 1325
Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640
| || | || ||| | | | | || || ||||| ||||| |||| || || ||
Sbjct 1326 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 1385
Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700
|| | || || ||| |||| |||||||| |||| | | |||||| || ||||||
Sbjct 1386 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 1445
Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760
|| || || | |||||| | |||| | || |||||||| ||||| || ||| ||
Sbjct 1446 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 1505
Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820
| || |||| | |||| || || ||||| || | || || ||||| ||| ||| ||
Sbjct 1506 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 1565
Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACT 880
|||||||||||||||||| | |||||||| || |||||||||||||||||||| ||| ||
Sbjct 1566 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCT 1625
Query 881 GCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCA 940
||||| |||||| || |||| ||| ||||||||||||||||||||||||||||
Sbjct 1626 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 1685
Query 941 GAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTT 1000
|||||||||||| | || ||||| |||||||| || ||||| ||||||| ||||||
Sbjct 1686 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTT 1745
Query 1001 CCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAAT 1060
||| ||| | ||||||| || ||| | |||||||| || || |||||
Sbjct 1746 CCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAT 1805
Query 1061 AGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAA 1120
||||||||||| |||||||||||||||||| ||||||||||||||| || ||| | ||
Sbjct 1806 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1865
Query 1121 GACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAA 1180
||||| || || || |||| ||| | |||||||| || | || ||||| || ||||||
Sbjct 1866 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAA 1925
Query 1181 GCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTA 1217
|||||| ||||||||||| || ||||| || ||||
Sbjct 1926 GCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA 1962
Score = 163 bits (180), Expect = 1e-36
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154
|| |||||| | ||||| || || || ||||| |||||||| ||||| || ||| |
Sbjct 423 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 482
Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214
|| || ||||||| | ||||||| ||||| | |||||||| | || |||| ||
Sbjct 483 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 542
Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274
|| || ||| || |||||||| |||||||||||||| |||||||| || ||||| |||
Sbjct 543 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 602
Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327
||||| |||||||||||||| || | || | || ||| ||||||| ||||
Sbjct 603 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 655
Score = 93.3 bits (102), Expect = 1e-15
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 4870 AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACTATCTCGCCGCCGCATTCCCCGAG 4929
||||||||| |||| || || ||||| || || ||||| || || ||||| || |||
Sbjct 198 AAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAG 257
Query 4930 CTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTAGTCCAGGCATGCAAGACGCTGGC 4989
|| || | ||||| ||||||||||||| ||||| | | || ||| ||||| ||
Sbjct 258 CTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGA 317
Query 4990 TTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTGAC 5028
|| | ||||| || ||||| || || ||||| || |||
Sbjct 318 TTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGAC 356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17727344147280
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