Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq34586 659 0.0 seq31726 452 1e-123 >seq34586 Length=1708 Score = 659 bits (730), Expect = 0.0 Identities = 1113/1596 (70%), Gaps = 49/1596 (3%) Strand=Plus/Plus Query 2006 TTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACA 2065 || || || ||| | || ||||| || || ||||| || ||| | ||| | || || || Sbjct 87 TTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACC 146 Query 2066 GAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGC 2125 || || ||||| || || | || | || || ||||||||||| ||||| || || Sbjct 147 GAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 206 Query 2126 GCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCG 2184 ||||| || ||| | ||||||||||| ||||| || ||||||||||| || || ||||| Sbjct 207 GCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCG 265 Query 2185 CTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAA 2244 ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || Sbjct 266 CTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAA 325 Query 2245 CATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGG 2304 ||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||| Sbjct 326 CATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGG 385 Query 2305 TGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGG 2364 || || || || ||||||||| ||||| ||||||| || || | | ||| ||||| || Sbjct 386 CGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGG 445 Query 2365 AAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGG 2424 ||||| || || | | |||| ||| |||| | ||| || | ||||| || |||| Sbjct 446 AAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGG 505 Query 2425 TGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT----ATGTAATGA 2480 || |||||| | | | | || | || || | | || Sbjct 506 AGTGATGTAATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTC 557 Query 2481 AAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCG 2540 | | | || | || ||||| ||| || || ||||| ||||||||||| | Sbjct 558 CGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTG 617 Query 2541 GAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAA 2600 | ||||| ||| || | ||| | ||| ||| || || |||||| || | Sbjct 618 GTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGGATA-AATTA 668 Query 2601 TGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACCTTGTCTTTG 2660 ||||||| ||||||| || || ||| | || |||||| | || || |||| ||| Sbjct 669 TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCC 728 Query 2661 AGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACT 2720 |||||| | ||||| || || | || || || || || | | ||||| |||| Sbjct 729 TTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACT 788 Query 2721 CTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTG 2780 | |||||| || ||||||||| | ||||| || || | ||||||||||| ||| Sbjct 789 CCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTA 848 Query 2781 TTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGC 2840 ||||||| || || || ||| |||| ||| |||| || ||||| | || ||| | | Sbjct 849 TTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAAC 908 Query 2841 AGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCT 2900 |||||||||| || ||||||||||| ||||||||| | ||||| || |||||| | Sbjct 909 AGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACA 965 Query 2901 CCTCTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAG 2957 | |||||| ||| ||| |||| ||| || || ||| || |||| |||| Sbjct 966 CTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAA 1025 Query 2958 TGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTT 3017 | ||||| || |||||| ||| ||||||| ||||| ||||| || ||| |||| | Sbjct 1026 TCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT 1085 Query 3018 GGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TGAGGATTAT 3070 | |||| || | | ||| ||||||| | ||| || | || || ||| | Sbjct 1086 G----GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCT 1138 Query 3071 AAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGAT 3130 | || | ||| | | || ||| || |||||||| || ||||| || || Sbjct 1139 CGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAG 1198 Query 3131 ACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAA 3190 ||| ||| | ||||| ||| ||| | |||||||||||||||| || ||| Sbjct 1199 ACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAA 1258 Query 3191 GCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGT 3250 || || || ||||| || ||||| || || |||||||||||||||||| ||||||| | Sbjct 1259 GCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCAT 1318 Query 3251 GACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTG 3310 || |||| || || ||| | || || ||||| | |||||| |||||| | || Sbjct 1319 GATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTT 1378 Query 3311 CTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCT 3370 ||||||||||| | | ||||||||||||||||| || || || ||||||||| | || Sbjct 1379 GTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCG 1438 Query 3371 CTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTAT 3430 | || || || |||||||| ||||| ||||||| || || || || || |||| | Sbjct 1439 TTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTT 1498 Query 3431 GTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATG 3488 |||||||||||| || || | ||||| ||| || ||| |||||||||||| | Sbjct 1499 GTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACT 1558 Query 3489 AAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTG 3548 ||| || || || || ||| | ||||| || |||||||||||||||||| | | Sbjct 1559 AAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCG 1616 Query 3549 ACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAA 3583 |||||| || ||||| ||| |||| || |||||| Sbjct 1617 ACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAA 1651 >seq31726 Length=1962 Score = 452 bits (500), Expect = 1e-123 Identities = 556/757 (73%), Gaps = 2/757 (0%) Strand=Plus/Plus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 1207 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1266 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 1267 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 1325 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 1326 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 1385 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 1386 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 1445 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 1446 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 1505 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 1506 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 1565 Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACT 880 |||||||||||||||||| | |||||||| || |||||||||||||||||||| ||| || Sbjct 1566 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCT 1625 Query 881 GCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCA 940 ||||| |||||| || |||| ||| |||||||||||||||||||||||||||| Sbjct 1626 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 1685 Query 941 GAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTT 1000 |||||||||||| | || ||||| |||||||| || ||||| ||||||| |||||| Sbjct 1686 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTT 1745 Query 1001 CCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAAT 1060 ||| ||| | ||||||| || ||| | |||||||| || || ||||| Sbjct 1746 CCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAT 1805 Query 1061 AGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAA 1120 ||||||||||| |||||||||||||||||| ||||||||||||||| || ||| | || Sbjct 1806 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1865 Query 1121 GACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAA 1180 ||||| || || || |||| ||| | |||||||| || | || ||||| || |||||| Sbjct 1866 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAA 1925 Query 1181 GCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTA 1217 |||||| ||||||||||| || ||||| || |||| Sbjct 1926 GCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA 1962 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 423 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 482 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 483 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 542 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 543 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 602 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 603 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 655 Score = 93.3 bits (102), Expect = 1e-15 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 4870 AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACTATCTCGCCGCCGCATTCCCCGAG 4929 ||||||||| |||| || || ||||| || || ||||| || || ||||| || ||| Sbjct 198 AAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAG 257 Query 4930 CTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTAGTCCAGGCATGCAAGACGCTGGC 4989 || || | ||||| ||||||||||||| ||||| | | || ||| ||||| || Sbjct 258 CTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGA 317 Query 4990 TTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTGAC 5028 || | ||||| || ||||| || || ||||| || ||| Sbjct 318 TTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGAC 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17727344147280