Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_007817.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq34586 794 0.0
seq31726 408 1e-110
seq33443 118 4e-23
>seq34586
Length=1708
Score = 794 bits (880), Expect = 0.0
Identities = 1142/1596 (72%), Gaps = 63/1596 (4%)
Strand=Plus/Plus
Query 2004 ACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAGAC 2063
|| ||| | || ||||| ||||||||||||||||| | || |||| | ||||||||
Sbjct 93 ACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGAT 152
Query 2064 GACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTCGC 2123
|| |||||||| | || || || || |||||||| ||||||||||| ||||||||
Sbjct 153 GATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGT 212
Query 2124 CGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTCCT 2183
||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 213 CGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCT 272
Query 2184 GCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCCAG 2243
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 273 GCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAA 332
Query 2244 ACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGAC 2303
|| || ||||| || ||||||||||| || || || ||||| ||||| ||||| | ||
Sbjct 333 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 392
Query 2304 CAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACT 2363
| || ||||| ||||||||| | ||||| |||||| ||||||||||||| |||||||||
Sbjct 393 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACT 452
Query 2364 GACCATGTTACACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATG 2423
||| | |||| | |||||| ||||| ||| || |||||||||| ||||||| |||
Sbjct 453 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATG 512
Query 2424 TAATGGCTAAA---------------GGCTCTCG---TCGGCGTTC---GCCGTCCCG-- 2460
||||| ||||| ||| |||| | | ||| | ||||| ||
Sbjct 513 TAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAG 572
Query 2461 ---CT----------CTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAAT 2507
|| |||||| ||||| || |||||||| || || |||||| |||
Sbjct 573 GTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA- 631
Query 2508 CTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCG 2567
|| |||||||||||||||| || || |||||| | |||||||| |||||||| ||
Sbjct 632 -TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCG 689
Query 2568 CTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTT 2627
| || || || || | |||||||| || || | |||| |||||| | || || |||
Sbjct 690 CCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTC 749
Query 2628 TAAAAACTATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAG 2687
| | || || || ||||| ||| ||||||||||||| || || | || || |
Sbjct 750 TTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTG 809
Query 2688 GCGCTATTCGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCT 2747
||||| | || ||||||||| | ||||| |||||||| | |||||| || || || |
Sbjct 810 GCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTT 869
Query 2748 TCTCTTTCTATATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAG 2807
| |||| ||| | || |||||||| | |||||| || | | ||| | |||||||| |
Sbjct 870 TTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGG 929
Query 2808 CTGGCGTTAATGCCACTCCTCTCGCACCTGTT---ACTACTGCCTCTGGCTGGGATGCTT 2864
||| |||||||||||||||||| | ||||| ||||||| | | || |
Sbjct 930 ATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTAT---ATTGACCATG 986
Query 2865 CTGCCTATCTTGGCACTATTCCATCCTCAAACC-TCAAGGTTCCTAAATTCTTACATCAA 2923
| || | ||||||||| ||| | ||| | ||| || | ||||| || |||
Sbjct 987 CCGCTTTTCTTGGCACGATT-AACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAG 1045
Query 2924 GGATACCTTAATATTTACAACAACTACTTTAAGCCACCGTGGGATG-CTGACCTTACATA 2982
|| || | ||||| || |||||||| ||||| | |||| ||||| |||||| ||| |
Sbjct 1046 GGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT-GGATGCCTGACCGTACCGA 1104
Query 2983 CGCTAACCCATCTAACATGCCTGAACAGGATTA---TAAATGGGGCGTTCG-TGTCGCTA 3038
||||||| |||| || | | || ||| | | | || | || || || |
Sbjct 1105 GGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCA 1161
Query 3039 ACTTAAAATCTATCTGGACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGA 3098
|| |||| | || ||||| || || | |||||| | || | || ||||
Sbjct 1162 TCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGA 1220
Query 3099 CCACTGGCGCTACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACA 3158
| ||| | || |||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 1221 CGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA 1280
Query 3159 CCCAACAAGAACGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAG 3218
| | ||||||||||| ||||||||| || || | ||| |||| || ||||
Sbjct 1281 CTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAG 1340
Query 3219 GTCACACCTCCTATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGG 3278
|| | ||||| ||||||| ||| ||||||||| | || | ||||||||| | | ||||
Sbjct 1341 GTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGG 1400
Query 3279 CCTCTGGCTATGACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCG 3338
| ||||||||||| || || || ||||||||| | || ||||| ||||| || ||||| |
Sbjct 1401 CATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTG 1460
Query 3339 TCCAACAAACATTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTA 3398
| ||||| || | || || || || || |||| ||| ||||| || ||| ||
Sbjct 1461 TTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGT 1520
Query 3399 TGACTCTCGCCGTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGT 3456
| ||||| || || ||| || || |||||| | ||| ||||| || || |||
Sbjct 1521 TTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAA 1578
Query 3457 CGGTAAAGAATCTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACC 3515
|| ||||| |||| || |||||||| | || ||||||||| | | |||||| |||
Sbjct 1579 CGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACT 1637
Query 3516 TGCCTCCGCGCGAAGTATCCCTTAAGGAATTCTTCC 3551
|||| ||||| ||| | || | ||||| | ||||
Sbjct 1638 TGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCC 1673
>seq31726
Length=1962
Score = 408 bits (452), Expect = 1e-110
Identities = 432/567 (76%), Gaps = 4/567 (1%)
Strand=Plus/Plus
Query 653 AAGGGTATTAAGGATGAATGCTCGAAAATCCTTGAGGAATCCACCATGAAATCACGTAGA 712
|| |||||||||||||| || || | | | || |||| ||||| |||||||| ||||||
Sbjct 1398 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 1457
Query 713 GGCTTTACCGTACAAAGACTAATGAATGCTATGCGCACTGCCCACACTGAGGGCTGGTAC 772
|||||| | | || | | |||||||| ||||| || || |||| || ||||
Sbjct 1458 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 1517
Query 773 GTTGTATTCGATACTCTTACTCTCGCCGATGACCGCCTTAAGGATTTCTATGATAATCCC 832
| || || || ||||| || | || || ||||| | ||| || ||||||||||||
Sbjct 1518 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCC 1577
Query 833 AATGCTCTCCGTGACTATTTCCGTGATATTGGTCGTATGGTTCTCACTGCCGAGGGTCGT 892
|||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1578 AATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGC 1637
Query 893 TCTGTCCATGATTCATCTTCGGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGCACC 952
| |||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 1638 AAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA-- 1695
Query 953 CAGC--ACGGCCGTTTACATTTTCACGCAGTGCACCTTATGCGCACACTTCCTCTGGGTT 1010
|||| | |||||| | ||||| || || |||||| ||||||| ||||||||| |||
Sbjct 1696 CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTA 1755
Query 1011 CTATCGACCCTAACTTTGGCAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAA 1070
| |||||||| ||||| | ||| || | | || || |||||||||||||||
Sbjct 1756 GCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAA 1815
Query 1071 ATACATGGCCCTATGGTTACTCTATGCCCATCGCGGTCCGGTACTCCCAAGACGCATTTT 1130
|||| ||||| ||||||||| |||||||||||| || || ||| | || ||||| ||||
Sbjct 1816 ATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTT 1875
Query 1131 CGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTTAAAGCTACCTCGT 1190
| || |||| ||| | ||||| |||||| | || || || || |||||||||||| |
Sbjct 1876 CACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTT 1935
Query 1191 ATATGGCTGTCGGCTTCTACGTCGCTA 1217
|||||||||| || ||||| || ||||
Sbjct 1936 ATATGGCTGTTGGTTTCTATGTGGCTA 1962
Score = 167 bits (184), Expect = 8e-38
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072
|| || || ||||| || || || ||||| ||||| |||||||| | ||| | ||
Sbjct 426 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 485
Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132
|| || |||| | ||||||| |||||| | |||||||| | || |||| |||||
Sbjct 486 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 545
Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192
|| ||| || |||||||| || |||||||||||||||||||| || ||||| |||||
Sbjct 546 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 605
Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242
|| |||||||||||||||||| | || || || ||| ||||||| ||||
Sbjct 606 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 655
Score = 123 bits (136), Expect = 9e-25
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 4789 CTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTGCATTCCCCGACCTCA 4848
|||| ||||||||||| ||||| || |||||||||||| ||||||| || || || |
Sbjct 202 CTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTA 261
Query 4849 ACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGGTTGACGCTGGCTTCC 4908
| | ||||| |||||||| |||| |||||| |||||||| ||||||||||| || ||
Sbjct 262 ATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTG 321
Query 4909 AAAACCAAAAAGA 4921
| || ||||||||
Sbjct 322 AGAATCAAAAAGA 334
>seq33443
Length=912
Score = 118 bits (130), Expect = 4e-23
Identities = 301/452 (67%), Gaps = 17/452 (4%)
Strand=Plus/Plus
Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197
||||||||| | || || ||||| | || | | ||| | |||||||||| | ||||
Sbjct 475 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 534
Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257
|| | |||||||||||| || | | | | ||| | || | || ||| |||
Sbjct 535 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 588
Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317
||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| |
Sbjct 589 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 648
Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375
|||||| | | || | | | | | ||||| |||| ||||| || | ||| ||
Sbjct 649 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 706
Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435
| ||| | | ||| | | ||| ||| | | ||| || |||||||| |
Sbjct 707 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 763
Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494
|| || | | |||||| || ||||| | |||| ||| |||||||||||| || |
Sbjct 764 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 820
Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554
|||||||||| || || |||||||||| || ||| ||| ||||| |||||||
Sbjct 821 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 880
Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGAT 4586
|| ||| |||| |||| |||||||||||
Sbjct 881 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGAT 912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17436260004840
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