Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq34586 794 0.0 seq31726 408 1e-110 seq33443 118 4e-23 >seq34586 Length=1708 Score = 794 bits (880), Expect = 0.0 Identities = 1142/1596 (72%), Gaps = 63/1596 (4%) Strand=Plus/Plus Query 2004 ACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAGAC 2063 || ||| | || ||||| ||||||||||||||||| | || |||| | |||||||| Sbjct 93 ACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGAT 152 Query 2064 GACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTCGC 2123 || |||||||| | || || || || |||||||| ||||||||||| |||||||| Sbjct 153 GATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGT 212 Query 2124 CGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTCCT 2183 ||| ||||||| ||||| |||||||| |||||||||| |||||||||||||||||| Sbjct 213 CGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCT 272 Query 2184 GCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCCAG 2243 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 273 GCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAA 332 Query 2244 ACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGAC 2303 || || ||||| || ||||||||||| || || || ||||| ||||| ||||| | || Sbjct 333 ACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAG 392 Query 2304 CAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACT 2363 | || ||||| ||||||||| | ||||| |||||| ||||||||||||| ||||||||| Sbjct 393 CGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACT 452 Query 2364 GACCATGTTACACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATG 2423 ||| | |||| | |||||| ||||| ||| || |||||||||| ||||||| ||| Sbjct 453 GACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATG 512 Query 2424 TAATGGCTAAA---------------GGCTCTCG---TCGGCGTTC---GCCGTCCCG-- 2460 ||||| ||||| ||| |||| | | ||| | ||||| || Sbjct 513 TAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAG 572 Query 2461 ---CT----------CTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAAT 2507 || |||||| ||||| || |||||||| || || |||||| ||| Sbjct 573 GTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA- 631 Query 2508 CTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCG 2567 || |||||||||||||||| || || |||||| | |||||||| |||||||| || Sbjct 632 -TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCG 689 Query 2568 CTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTT 2627 | || || || || | |||||||| || || | |||| |||||| | || || ||| Sbjct 690 CCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTC 749 Query 2628 TAAAAACTATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAG 2687 | | || || || ||||| ||| ||||||||||||| || || | || || | Sbjct 750 TTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTG 809 Query 2688 GCGCTATTCGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCT 2747 ||||| | || ||||||||| | ||||| |||||||| | |||||| || || || | Sbjct 810 GCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTT 869 Query 2748 TCTCTTTCTATATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAG 2807 | |||| ||| | || |||||||| | |||||| || | | ||| | |||||||| | Sbjct 870 TTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGG 929 Query 2808 CTGGCGTTAATGCCACTCCTCTCGCACCTGTT---ACTACTGCCTCTGGCTGGGATGCTT 2864 ||| |||||||||||||||||| | ||||| ||||||| | | || | Sbjct 930 ATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTAT---ATTGACCATG 986 Query 2865 CTGCCTATCTTGGCACTATTCCATCCTCAAACC-TCAAGGTTCCTAAATTCTTACATCAA 2923 | || | ||||||||| ||| | ||| | ||| || | ||||| || ||| Sbjct 987 CCGCTTTTCTTGGCACGATT-AACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAG 1045 Query 2924 GGATACCTTAATATTTACAACAACTACTTTAAGCCACCGTGGGATG-CTGACCTTACATA 2982 || || | ||||| || |||||||| ||||| | |||| ||||| |||||| ||| | Sbjct 1046 GGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT-GGATGCCTGACCGTACCGA 1104 Query 2983 CGCTAACCCATCTAACATGCCTGAACAGGATTA---TAAATGGGGCGTTCG-TGTCGCTA 3038 ||||||| |||| || | | || ||| | | | || | || || || | Sbjct 1105 GGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCA 1161 Query 3039 ACTTAAAATCTATCTGGACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGA 3098 || |||| | || ||||| || || | |||||| | || | || |||| Sbjct 1162 TCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGA 1220 Query 3099 CCACTGGCGCTACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACA 3158 | ||| | || |||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct 1221 CGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA 1280 Query 3159 CCCAACAAGAACGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAG 3218 | | ||||||||||| ||||||||| || || | ||| |||| || |||| Sbjct 1281 CTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAG 1340 Query 3219 GTCACACCTCCTATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGG 3278 || | ||||| ||||||| ||| ||||||||| | || | ||||||||| | | |||| Sbjct 1341 GTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGG 1400 Query 3279 CCTCTGGCTATGACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCG 3338 | ||||||||||| || || || ||||||||| | || ||||| ||||| || ||||| | Sbjct 1401 CATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTG 1460 Query 3339 TCCAACAAACATTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTA 3398 | ||||| || | || || || || || |||| ||| ||||| || ||| || Sbjct 1461 TTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGT 1520 Query 3399 TGACTCTCGCCGTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGT 3456 | ||||| || || ||| || || |||||| | ||| ||||| || || ||| Sbjct 1521 TTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAA 1578 Query 3457 CGGTAAAGAATCTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACC 3515 || ||||| |||| || |||||||| | || ||||||||| | | |||||| ||| Sbjct 1579 CGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACT 1637 Query 3516 TGCCTCCGCGCGAAGTATCCCTTAAGGAATTCTTCC 3551 |||| ||||| ||| | || | ||||| | |||| Sbjct 1638 TGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCC 1673 >seq31726 Length=1962 Score = 408 bits (452), Expect = 1e-110 Identities = 432/567 (76%), Gaps = 4/567 (1%) Strand=Plus/Plus Query 653 AAGGGTATTAAGGATGAATGCTCGAAAATCCTTGAGGAATCCACCATGAAATCACGTAGA 712 || |||||||||||||| || || | | | || |||| ||||| |||||||| |||||| Sbjct 1398 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 1457 Query 713 GGCTTTACCGTACAAAGACTAATGAATGCTATGCGCACTGCCCACACTGAGGGCTGGTAC 772 |||||| | | || | | |||||||| ||||| || || |||| || |||| Sbjct 1458 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 1517 Query 773 GTTGTATTCGATACTCTTACTCTCGCCGATGACCGCCTTAAGGATTTCTATGATAATCCC 832 | || || || ||||| || | || || ||||| | ||| || |||||||||||| Sbjct 1518 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCC 1577 Query 833 AATGCTCTCCGTGACTATTTCCGTGATATTGGTCGTATGGTTCTCACTGCCGAGGGTCGT 892 |||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1578 AATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGC 1637 Query 893 TCTGTCCATGATTCATCTTCGGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGCACC 952 | |||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct 1638 AAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA-- 1695 Query 953 CAGC--ACGGCCGTTTACATTTTCACGCAGTGCACCTTATGCGCACACTTCCTCTGGGTT 1010 |||| | |||||| | ||||| || || |||||| ||||||| ||||||||| ||| Sbjct 1696 CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTA 1755 Query 1011 CTATCGACCCTAACTTTGGCAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAA 1070 | |||||||| ||||| | ||| || | | || || ||||||||||||||| Sbjct 1756 GCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAA 1815 Query 1071 ATACATGGCCCTATGGTTACTCTATGCCCATCGCGGTCCGGTACTCCCAAGACGCATTTT 1130 |||| ||||| ||||||||| |||||||||||| || || ||| | || ||||| |||| Sbjct 1816 ATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTT 1875 Query 1131 CGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTTAAAGCTACCTCGT 1190 | || |||| ||| | ||||| |||||| | || || || || |||||||||||| | Sbjct 1876 CACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTT 1935 Query 1191 ATATGGCTGTCGGCTTCTACGTCGCTA 1217 |||||||||| || ||||| || |||| Sbjct 1936 ATATGGCTGTTGGTTTCTATGTGGCTA 1962 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 426 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 485 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 486 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 545 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 546 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 605 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 606 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 655 Score = 123 bits (136), Expect = 9e-25 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 4789 CTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTGCATTCCCCGACCTCA 4848 |||| ||||||||||| ||||| || |||||||||||| ||||||| || || || | Sbjct 202 CTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTA 261 Query 4849 ACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGGTTGACGCTGGCTTCC 4908 | | ||||| |||||||| |||| |||||| |||||||| ||||||||||| || || Sbjct 262 ATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTG 321 Query 4909 AAAACCAAAAAGA 4921 | || |||||||| Sbjct 322 AGAATCAAAAAGA 334 >seq33443 Length=912 Score = 118 bits (130), Expect = 4e-23 Identities = 301/452 (67%), Gaps = 17/452 (4%) Strand=Plus/Plus Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197 ||||||||| | || || ||||| | || | | ||| | |||||||||| | |||| Sbjct 475 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 534 Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257 || | |||||||||||| || | | | | ||| | || | || ||| ||| Sbjct 535 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 588 Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317 ||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| | Sbjct 589 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 648 Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375 |||||| | | || | | | | | ||||| |||| ||||| || | ||| || Sbjct 649 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 706 Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435 | ||| | | ||| | | ||| ||| | | ||| || |||||||| | Sbjct 707 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 763 Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494 || || | | |||||| || ||||| | |||| ||| |||||||||||| || | Sbjct 764 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 820 Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554 |||||||||| || || |||||||||| || ||| ||| ||||| ||||||| Sbjct 821 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 880 Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGAT 4586 || ||| |||| |||| ||||||||||| Sbjct 881 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGAT 912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17436260004840