Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_007856.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq34586 845 0.0
seq31726 432 1e-117
>seq34586
Length=1708
Score = 845 bits (936), Expect = 0.0
Identities = 1151/1591 (72%), Gaps = 80/1591 (5%)
Strand=Plus/Plus
Query 2009 TTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACT 2068
|| || |||||| | ||||| || || || |||||||| ||| | ||| | || | ||
Sbjct 87 TTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACC 146
Query 2069 GAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGT 2128
|| || |||||||| || | || || || || |||||||| ||||||||||| |||
Sbjct 147 GAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 206
Query 2129 GCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGC 2188
||||| ||| ||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 207 GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGC 266
Query 2189 TTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAAC 2248
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 267 TTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 326
Query 2249 ATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGT 2308
||||||||||| ||||| || ||||||||||||||||| || |||||||| ||||||||
Sbjct 327 ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGC 386
Query 2309 GTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGA 2368
||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 387 GTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGA 446
Query 2369 AACACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGA 2428
|||||||| || ||||| |||||||| | || | |||| ||||| | || || |||||
Sbjct 447 AACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGA 506
Query 2429 GTGATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGGT------------- 2465
|||||| ||||| ||||||| | | || ||| |||||
Sbjct 507 GTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGT 566
Query 2466 --------------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAAT 2511
||||| |||||| ||||| || |||||||| || || |||||
Sbjct 567 TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAAT 626
Query 2512 TCTAATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAA 2571
| |||| | |||||||||||||||| || || |||||| | |||||||| | ||||
Sbjct 627 TTTAATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAA 683
Query 2572 CTTCCGCTGAACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCG 2631
|| ||| || ||||| ||||||||||| || ||||| | ||| |||||| | || |
Sbjct 684 CTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTG 743
Query 2632 GACGCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAA 2691
| || |||| || || || ||||| ||| ||||||| || || | ||| | ||
Sbjct 744 GTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACG 803
Query 2692 TGGTAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCG 2751
|| |||||| | ||||||||||| | |||||||| || ||| | |||||| || |
Sbjct 804 CCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAG 863
Query 2752 ACGTCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTA 2811
|| | |||||||| ||| ||||||||||||| || |||||| |||| |||||| | || |
Sbjct 864 ACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCA 923
Query 2812 TGAAGACTGGCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTCCTCTGGCT---GG 2867
||||| ||| ||||| || |||||||| | | | |||| | |||| |
Sbjct 924 TGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC----ACTACTGGTTATATT 979
Query 2868 GATTCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAAGGTTCCTAA--AT 2922
|| ||| || | ||||||||| || ||| || ||| || | ||||| ||
Sbjct 980 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AAAATCCCTAAGCAT 1036
Query 2923 TCCTTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCGCCGTGGTCTAATG 2982
| || ||| |||| | ||||| || |||||||| ||||| |||||||| ||
Sbjct 1037 TTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTG 1094
Query 2983 ACCTCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACAAATGGGGCGTTC- 3039
||| ||| | ||||||| ||||| || | | ||| | | | | |||
Sbjct 1095 ACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCC 1151
Query 3040 -GTGTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGATTCATTAAC-TAA 3097
|| || | || |||| | || ||||| || || ||||||||||| | | | | |
Sbjct 1152 GTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTC 1209
Query 3098 GCAGGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCCTACAAGCTGCCTA 3154
| | ||||| ||| |||||| |||| || |||||||| || |||||||| ||
Sbjct 1210 TCGCCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 1266
Query 3155 TGCTAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATATTAT 3214
|||||| | || ||||| || |||||||| || |||||| || |||| ||| ||||
Sbjct 1267 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 1326
Query 3215 GAAAGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCG 3274
||||| ||| | ||||| || |||| ||| ||||||||| | || | |||||
Sbjct 1327 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 1386
Query 3275 CTCTGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCA 3334
|||| | | ||||| ||||||||||| || || || ||||||||||| || || || ||
Sbjct 1387 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 1446
Query 3335 GTTCTCTGGTCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGA 3394
||| |||||||| || ||||| |||| ||| ||| ||||| || |||| |||||||||
Sbjct 1447 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 1506
Query 3395 GCATGGCGTAATTATGACTTTATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAA 3452
||||||| || | ||| | | || ||| || || |||||| || ||| ||
Sbjct 1507 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAG 1564
Query 3453 ATGCACTATCTCGTCGGTAAGGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCT 3512
|| || || || || ||| | || |||||||||| || ||||| | ||||||| |
Sbjct 1565 ATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTT 1624
Query 3513 CT-TATGGCTAACCTGCCTCCGCGTGAAATT 3542
| |||||| ||| |||| ||||||||||||
Sbjct 1625 TTGTATGGC-AACTTGCCGCCGCGTGAAATT 1654
>seq31726
Length=1962
Score = 432 bits (478), Expect = 1e-117
Identities = 557/764 (73%), Gaps = 16/764 (2%)
Strand=Plus/Plus
Query 468 TAATCGAAGAGTTAGACGAATGCTACAACGTGCTCGGACAACTTGATATTAATAACACTA 527
|||| || || || | |||||||||| |||||| ||||||||||||||||||||||
Sbjct 1207 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1266
Query 528 TAGACCACAAACCTATCGGTAACGCCAAATGGGACTTAATGTATGAAAAACCTGTCTATA 587
|||||||| || || ||| |||||| ||| | | || || | ||
Sbjct 1267 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTT---- 1322
Query 588 AACACTGGTATG-----AACTGGTATCAAAACGACCCCTTAAATCAATCAGAGAGGACTA 642
|| | | | || | |||| | |||| || ||||| || | || || ||
Sbjct 1323 -ACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTA 1381
Query 643 CAACTATGCAAAGGCTAAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCAC 702
|| || | || || |||| ||| |||||||| || | | | || |||| |||||
Sbjct 1382 TAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCAC 1441
Query 703 CATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCA 762
|||||||| || | |||||| | ||||| | ||||||||||| ||||| || ||
Sbjct 1442 TATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCA 1501
Query 763 CACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGG 821
||||||| |||| | | || || || |||||||| || ||||| || || |||| |||
Sbjct 1502 TGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGG 1560
Query 822 ACTTCTATGCTAACCCCAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTC 881
|| |||| ||| ||||||||| | ||||||||||| ||||||||||| ||||||||||
Sbjct 1561 CGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTC 1620
Query 882 TCACTGCCGAGGGTCGTTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTG 941
| ||||||||||||| || |||||||| | |||||||||||||| |||||||
Sbjct 1621 TTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTG 1680
Query 942 TGCCTGAGTATGGCACCCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCG 999
||||||||||||| | |||| |||||||| | || || || || ||||| |||||||
Sbjct 1681 TGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCG 1738
Query 1000 CACACTTCCTTTGGGTTCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCA 1059
||||||||| ||| | |||||||| |||||| | ||| || | | || ||
Sbjct 1739 GACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA 1798
Query 1060 AATAAATAGCTTGCAAAACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTA 1119
|||||||||||||||| || ||||||||||||||| ||||||||||||||| || ||
Sbjct 1799 GTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTA 1858
Query 1120 TTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACC 1179
| ||||| ||||| || || |||| ||| | |||||||| ||| | || ||||| ||
Sbjct 1859 CACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC 1918
Query 1180 CCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTA 1223
|||||| | ||| ||||||||||| || ||||| || ||||
Sbjct 1919 GCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA 1962
Score = 170 bits (188), Expect = 7e-39
Identities = 434/687 (63%), Gaps = 42/687 (6%)
Strand=Plus/Plus
Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843
||| |||| |||||| |||||||| |||||||||||| |||| || || || || ||
Sbjct 203 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 262
Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903
| ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| |
Sbjct 263 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 322
Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963
|| ||||| || | ||| ||||| || |||
Sbjct 323 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 382
Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023
|| ||||| | ||||| || || ||||| ||
Sbjct 383 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 442
Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083
||| || ||||| ||||| || ||||| || | || || || |||| | ||
Sbjct 443 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 502
Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143
||||| ||||| | |||||||| | || |||| ||||| || ||| || |||||
Sbjct 503 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 562
Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203
||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| |
Sbjct 563 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 622
Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGATGCTGTTCGTGCTAACACTGAACGTAC 5263
|||| | ||||| ||||| | ||||| |||| |||| | || |
Sbjct 623 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC-----ATCA--------GC 669
Query 5264 ACATGTAGAAACGGACCGCTCTAAGCAGGAGGTCCAAAACTCTCGTTACGCTTCCTCACA 5323
| | | |||| | | || || | || || ||
Sbjct 670 AAACGCAGAATCAG-----------------------------CGGTATGGCTCTTCTCA 700
Query 5324 AGTCGGTAAAACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGT 5383
| || || || |||||| | || |||||| | | ||| || |||||||| | ||
Sbjct 701 TATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGT 760
Query 5384 TGATTATTTTCGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGA 5443
|||| ||||| ||| ||||||||||||| || |||||||||||||||| | |||||
Sbjct 761 TGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGA 820
Query 5444 TGGCAAATCGGATGGGATAAGCTCAAA 5470
|| ||| | ||||| || |||| ||
Sbjct 821 CGGTAAAGCTGATGGTATTGGCTCTAA 847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17436260004840
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