Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq34586 845 0.0 seq31726 432 1e-117 >seq34586 Length=1708 Score = 845 bits (936), Expect = 0.0 Identities = 1151/1591 (72%), Gaps = 80/1591 (5%) Strand=Plus/Plus Query 2009 TTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACT 2068 || || |||||| | ||||| || || || |||||||| ||| | ||| | || | || Sbjct 87 TTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACC 146 Query 2069 GAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGT 2128 || || |||||||| || | || || || || |||||||| ||||||||||| ||| Sbjct 147 GAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 206 Query 2129 GCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGC 2188 ||||| ||| ||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 207 GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGC 266 Query 2189 TTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAAC 2248 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 267 TTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 326 Query 2249 ATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGT 2308 ||||||||||| ||||| || ||||||||||||||||| || |||||||| |||||||| Sbjct 327 ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGC 386 Query 2309 GTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGA 2368 ||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||| Sbjct 387 GTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGA 446 Query 2369 AACACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGA 2428 |||||||| || ||||| |||||||| | || | |||| ||||| | || || ||||| Sbjct 447 AACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGA 506 Query 2429 GTGATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGGT------------- 2465 |||||| ||||| ||||||| | | || ||| ||||| Sbjct 507 GTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGT 566 Query 2466 --------------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAAT 2511 ||||| |||||| ||||| || |||||||| || || ||||| Sbjct 567 TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAAT 626 Query 2512 TCTAATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAA 2571 | |||| | |||||||||||||||| || || |||||| | |||||||| | |||| Sbjct 627 TTTAATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAA 683 Query 2572 CTTCCGCTGAACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCG 2631 || ||| || ||||| ||||||||||| || ||||| | ||| |||||| | || | Sbjct 684 CTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTG 743 Query 2632 GACGCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAA 2691 | || |||| || || || ||||| ||| ||||||| || || | ||| | || Sbjct 744 GTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACG 803 Query 2692 TGGTAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCG 2751 || |||||| | ||||||||||| | |||||||| || ||| | |||||| || | Sbjct 804 CCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAG 863 Query 2752 ACGTCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTA 2811 || | |||||||| ||| ||||||||||||| || |||||| |||| |||||| | || | Sbjct 864 ACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCA 923 Query 2812 TGAAGACTGGCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTCCTCTGGCT---GG 2867 ||||| ||| ||||| || |||||||| | | | |||| | |||| | Sbjct 924 TGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC----ACTACTGGTTATATT 979 Query 2868 GATTCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAAGGTTCCTAA--AT 2922 || ||| || | ||||||||| || ||| || ||| || | ||||| || Sbjct 980 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AAAATCCCTAAGCAT 1036 Query 2923 TCCTTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCGCCGTGGTCTAATG 2982 | || ||| |||| | ||||| || |||||||| ||||| |||||||| || Sbjct 1037 TTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTG 1094 Query 2983 ACCTCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACAAATGGGGCGTTC- 3039 ||| ||| | ||||||| ||||| || | | ||| | | | | ||| Sbjct 1095 ACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCC 1151 Query 3040 -GTGTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGATTCATTAAC-TAA 3097 || || | || |||| | || ||||| || || ||||||||||| | | | | | Sbjct 1152 GTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTC 1209 Query 3098 GCAGGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCCTACAAGCTGCCTA 3154 | | ||||| ||| |||||| |||| || |||||||| || |||||||| || Sbjct 1210 TCGCCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 1266 Query 3155 TGCTAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATATTAT 3214 |||||| | || ||||| || |||||||| || |||||| || |||| ||| |||| Sbjct 1267 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 1326 Query 3215 GAAAGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCG 3274 ||||| ||| | ||||| || |||| ||| ||||||||| | || | ||||| Sbjct 1327 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 1386 Query 3275 CTCTGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCA 3334 |||| | | ||||| ||||||||||| || || || ||||||||||| || || || || Sbjct 1387 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 1446 Query 3335 GTTCTCTGGTCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGA 3394 ||| |||||||| || ||||| |||| ||| ||| ||||| || |||| ||||||||| Sbjct 1447 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 1506 Query 3395 GCATGGCGTAATTATGACTTTATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAA 3452 ||||||| || | ||| | | || ||| || || |||||| || ||| || Sbjct 1507 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAG 1564 Query 3453 ATGCACTATCTCGTCGGTAAGGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCT 3512 || || || || || ||| | || |||||||||| || ||||| | ||||||| | Sbjct 1565 ATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTT 1624 Query 3513 CT-TATGGCTAACCTGCCTCCGCGTGAAATT 3542 | |||||| ||| |||| |||||||||||| Sbjct 1625 TTGTATGGC-AACTTGCCGCCGCGTGAAATT 1654 >seq31726 Length=1962 Score = 432 bits (478), Expect = 1e-117 Identities = 557/764 (73%), Gaps = 16/764 (2%) Strand=Plus/Plus Query 468 TAATCGAAGAGTTAGACGAATGCTACAACGTGCTCGGACAACTTGATATTAATAACACTA 527 |||| || || || | |||||||||| |||||| |||||||||||||||||||||| Sbjct 1207 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1266 Query 528 TAGACCACAAACCTATCGGTAACGCCAAATGGGACTTAATGTATGAAAAACCTGTCTATA 587 |||||||| || || ||| |||||| ||| | | || || | || Sbjct 1267 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTT---- 1322 Query 588 AACACTGGTATG-----AACTGGTATCAAAACGACCCCTTAAATCAATCAGAGAGGACTA 642 || | | | || | |||| | |||| || ||||| || | || || || Sbjct 1323 -ACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTA 1381 Query 643 CAACTATGCAAAGGCTAAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCAC 702 || || | || || |||| ||| |||||||| || | | | || |||| ||||| Sbjct 1382 TAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCAC 1441 Query 703 CATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCA 762 |||||||| || | |||||| | ||||| | ||||||||||| ||||| || || Sbjct 1442 TATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCA 1501 Query 763 CACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGG 821 ||||||| |||| | | || || || |||||||| || ||||| || || |||| ||| Sbjct 1502 TGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGG 1560 Query 822 ACTTCTATGCTAACCCCAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTC 881 || |||| ||| ||||||||| | ||||||||||| ||||||||||| |||||||||| Sbjct 1561 CGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTC 1620 Query 882 TCACTGCCGAGGGTCGTTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTG 941 | ||||||||||||| || |||||||| | |||||||||||||| ||||||| Sbjct 1621 TTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTG 1680 Query 942 TGCCTGAGTATGGCACCCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCG 999 ||||||||||||| | |||| |||||||| | || || || || ||||| ||||||| Sbjct 1681 TGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCG 1738 Query 1000 CACACTTCCTTTGGGTTCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCA 1059 ||||||||| ||| | |||||||| |||||| | ||| || | | || || Sbjct 1739 GACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA 1798 Query 1060 AATAAATAGCTTGCAAAACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTA 1119 |||||||||||||||| || ||||||||||||||| ||||||||||||||| || || Sbjct 1799 GTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTA 1858 Query 1120 TTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACC 1179 | ||||| ||||| || || |||| ||| | |||||||| ||| | || ||||| || Sbjct 1859 CACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC 1918 Query 1180 CCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTA 1223 |||||| | ||| ||||||||||| || ||||| || |||| Sbjct 1919 GCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA 1962 Score = 170 bits (188), Expect = 7e-39 Identities = 434/687 (63%), Gaps = 42/687 (6%) Strand=Plus/Plus Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 203 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 262 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 263 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 322 Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963 || ||||| || | ||| ||||| || ||| Sbjct 323 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 382 Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023 || ||||| | ||||| || || ||||| || Sbjct 383 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 442 Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083 ||| || ||||| ||||| || ||||| || | || || || |||| | || Sbjct 443 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 502 Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143 ||||| ||||| | |||||||| | || |||| ||||| || ||| || ||||| Sbjct 503 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 562 Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203 ||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| | Sbjct 563 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 622 Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGATGCTGTTCGTGCTAACACTGAACGTAC 5263 |||| | ||||| ||||| | ||||| |||| |||| | || | Sbjct 623 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC-----ATCA--------GC 669 Query 5264 ACATGTAGAAACGGACCGCTCTAAGCAGGAGGTCCAAAACTCTCGTTACGCTTCCTCACA 5323 | | | |||| | | || || | || || || Sbjct 670 AAACGCAGAATCAG-----------------------------CGGTATGGCTCTTCTCA 700 Query 5324 AGTCGGTAAAACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGT 5383 | || || || |||||| | || |||||| | | ||| || |||||||| | || Sbjct 701 TATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGT 760 Query 5384 TGATTATTTTCGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGA 5443 |||| ||||| ||| ||||||||||||| || |||||||||||||||| | ||||| Sbjct 761 TGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGA 820 Query 5444 TGGCAAATCGGATGGGATAAGCTCAAA 5470 || ||| | ||||| || |||| || Sbjct 821 CGGTAAAGCTGATGGTATTGGCTCTAA 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17436260004840