Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq716 803 0.0 >seq716 Length=4292 Score = 803 bits (890), Expect = 0.0 Identities = 1407/2022 (70%), Gaps = 66/2022 (3%) Strand=Plus/Plus Query 1664 GCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGA 1723 ||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 6 GCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGA 65 Query 1724 GGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCCATC 1783 | |||||| | || ||| | |||||| ||||||||||| ||||||||||||| Sbjct 66 GAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC 125 Query 1784 ATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATGTTA 1842 | || |||| | ||| ||||||||||||| | || |||||||| | | |||||| | Sbjct 126 AACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT 184 Query 1843 GGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAATCA 1902 || | || ||||||||||||| | || || |||||| || ||||||| | | || Sbjct 185 GGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCT 244 Query 1903 ATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACAAACCAC 1962 | ||||||| | ||||| ||||| || |||| || ||| |||||| Sbjct 245 CTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC--AACCAC 302 Query 1963 AAA--GGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAACTGC 2016 || || || ||||| | | |||| || ||| | ||| || || || || Sbjct 303 TAATAGGTAA--GAAATCA-TGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGC 359 Query 2017 TATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGATTT 2076 | | || ||||| || || ||||| || ||| | ||| | || || || || || ||||| Sbjct 360 TTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT 419 Query 2077 TGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG-TG 2135 || || | || | || || ||||||||||| ||||| || || ||||| || || Sbjct 420 CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTG 479 Query 2136 CTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTGCTC 2195 | | ||||||||||| ||||| || ||||||||||| || || |||||||||||||||| Sbjct 480 C-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC 538 Query 2196 CTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCCAAACCG 2255 |||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 539 CTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGG 598 Query 2256 CCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAACGCC 2315 ||||||||||||||||||| ||||| ||||| |||||||| | ||||| || || || | Sbjct 599 CCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTC 658 Query 2316 CCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAAACAAAGATC 2375 | ||||||||| ||||| ||||||| || || | | ||| ||||| ||||||| || Sbjct 659 CGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACG 718 Query 2376 TTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGGTGTCATGTAAA 2435 || | | |||| ||| |||| | ||| || | ||||| || |||| || |||||| Sbjct 719 TTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 778 Query 2436 GACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT----ATGTAATGAAAAAATCAATT 2491 | | | | || | || || | | || | | | Sbjct 779 G--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTG 830 Query 2492 CGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCGGAACACAATAC 2551 || | || ||||| ||| || || ||||| ||||||||||| || ||||| Sbjct 831 CGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTT 890 Query 2552 TAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAATGTCTAACGTT 2611 ||| || | ||| | ||| ||| || || |||||| || |||||||| || Sbjct 891 TAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGGATA-AATTATGTCTAATATT 941 Query 2612 CAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGTAAA 2671 ||||| || || ||| | || |||||| | || || |||| ||| |||||| | Sbjct 942 CAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAG 1001 Query 2672 ATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAGTGT 2731 ||||| || || | || || || || || | | ||||| ||||| |||||| Sbjct 1002 ATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATG 1061 Query 2732 GATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCACGC 2791 || ||||||||| | ||||| || || | ||||||||||| ||| ||||||| Sbjct 1062 GACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACT 1121 Query 2792 GTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATTAAC 2851 || || || ||| |||| ||| |||| || ||||| | || ||| | ||||||||||| Sbjct 1122 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAG 1181 Query 2852 TTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCTCCTCTGGTT-- 2909 || ||||||||||| ||||||||| | ||||| || |||||| | | |||||| Sbjct 1182 TTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACACTACTGGTTAT 1238 Query 2910 -GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAATTC 2968 ||| ||| |||| ||| || || ||| || |||| |||| | ||||| Sbjct 1239 ATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCAT 1298 Query 2969 TTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGGTCTGATGAC 3028 || |||||| ||| ||||||| ||||| ||||| || ||| |||| || |||| | Sbjct 1299 TTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTG----GATGCC 1354 Query 3029 TTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TGAGGATTATAAATGGGGCGT 3081 | | | ||| ||||||| | ||| || | || || ||| | | || | Sbjct 1355 TGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTT 1411 Query 3082 ACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATACTCGTACATC 3141 ||| | | || ||| || |||||||| || ||||| || || ||| || Sbjct 1412 CCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC 1471 Query 3142 TGAAAACATGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGCCGCATACGC 3201 | | ||||| ||| ||| | |||||||||||||||| || ||||| || || || Sbjct 1472 TCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGC 1531 Query 3202 TAAATTACATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGACATTATGAA 3261 ||| || ||||| || || |||||||||||||||||| ||||||| ||| |||| Sbjct 1532 TAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTC 1591 Query 3262 AGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCTCATGCGCTC 3321 || || ||| | || || ||||| | |||||| |||||| | || |||||||||| Sbjct 1592 TTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTC 1651 Query 3322 TGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATT 3381 | | | ||||||||||||||||| || || || ||||||||| | || | || || || Sbjct 1652 TAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTT 1711 Query 3382 CTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCA 3441 |||||||| ||||| ||||||| || || || || || |||| |||||||||||| Sbjct 1712 TTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCA 1771 Query 3442 TCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAATGGAAATG 3499 | || || | ||||| ||| || ||| |||||||||||| | ||| || || Sbjct 1772 TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATT 1829 Query 3500 CACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACCCTGCACTG 3559 || || ||| | ||||| || |||||||||||||||||| | ||||||| || Sbjct 1830 CAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG 1889 Query 3560 -ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCACCC 3616 ||||| ||| |||| || |||||| | || | || || | |||| || | | | Sbjct 1890 TATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTC 1948 Query 3617 GATTCTGCTAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 | ||| || || || || |||||||| || ||||||||| Sbjct 1949 G--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 1988 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 3406 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 3465 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 3466 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 3525 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 3526 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 3585 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 3586 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 3638 Score = 154 bits (170), Expect = 5e-34 Identities = 325/482 (67%), Gaps = 17/482 (4%) Strand=Plus/Plus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 2859 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 2918 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 2919 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 2978 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2979 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 3038 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 3039 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 3097 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 3098 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 3157 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 3158 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 3217 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 3218 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 3277 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || | Sbjct 3278 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 3337 Query 5027 AC 5028 || Sbjct 3338 AC 3339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17734195943560