Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq716 960 0.0 >seq716 Length=4292 Score = 960 bits (1064), Expect = 0.0 Identities = 1567/2229 (70%), Gaps = 92/2229 (4%) Strand=Plus/Plus Query 1664 GCAGGAATTACTGCTACTCACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGA 1723 |||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct 6 GCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGA 65 Query 1724 AGAAATTCAATCTGAACTTAAAAAATTCGAGAAGCTCTTACTTCGCCACCTTTCGCCATC 1783 |||||| | || ||| | ||||||||||||||||| || ||||||||||||| Sbjct 66 GAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC 125 Query 1784 ACCTGAACG-TACTGGCAAAGACTGACGCTCTCGACGAGGAAAAATACCTAAATATGCTA 1842 | || |||| | ||| |||| |||||||| | || ||||| || | || |||||||| Sbjct 126 AACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT 184 Query 1843 GGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACATGGTAAACAATCA 1902 || | || ||||||||||||| | || || |||||| || ||||||| | | || Sbjct 185 GGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCT 244 Query 1903 ATGCTTGACTTATTAAATGAACGTGGACTATTATCCACATCAA--------CAACCAACC 1954 | ||||| | ||||| || |||||| || |||| || |||||| | Sbjct 245 CTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCA--C 302 Query 1955 CAAAAGGAAATACAAAATGA---ACTCTAACGAATCTGCTGTTGCCTTCGCTACTGCTCT 2011 || ||| || | | |||| | || ||| | || ||| || ||| | Sbjct 303 TAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTT 362 Query 2012 CGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAGACGACTTCGA 2071 || ||||| ||||||||||||||||| | || |||| | |||||||| || ||||| Sbjct 363 GGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGA 422 Query 2072 TTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTCGCCGCGCTAT 2131 ||| | || || || || |||||||| ||||||||||| |||||||| ||| | Sbjct 423 TTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGT 482 Query 2132 TGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTCCTGCTCCTGT 2191 |||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 483 TGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGT 542 Query 2192 TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCCAGACAGCATG 2251 |||||||||||||||||||||||||||||||||||||||||| ||||| || || || || Sbjct 543 TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTG 602 Query 2252 TCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGACCAGCCAGT 2311 ||| || ||||||||||| || || || ||||| ||||| ||||| | || | || || Sbjct 603 TCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGT 662 Query 2312 TAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACTGACCATGT 2371 ||| ||||||||| | ||||| |||||| ||||||||||||| |||||||||||| | | Sbjct 663 TAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCT 722 Query 2372 TACACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATGTAATGGCT 2431 ||| | |||||| ||||| ||| || |||||||||| ||||||| |||||||| || Sbjct 723 TACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCT 782 Query 2432 AAA---------------GGCTCTCG---TCGGCGTTC---GCCGTCCCG-----CT--- 2462 ||| ||| |||| | | ||| | ||||| || || Sbjct 783 AAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAA 842 Query 2463 -------CTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTTCTAGG 2515 |||||| ||||| || |||||||| || || |||||| ||| || ||| Sbjct 843 GGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA--TTGCAGG 900 Query 2516 GGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGACCGC 2575 ||||||||||||| || || |||||| | |||||||| |||||||| ||| || || Sbjct 901 GGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGT 959 Query 2576 ATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAACT 2635 || || | |||||||| || || | |||| |||||| | || || ||| | | || Sbjct 960 ATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACC 1019 Query 2636 ATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTATT 2695 || || ||||| ||| ||||||||||||| || || | || || |||||| | Sbjct 1020 ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC 1079 Query 2696 CGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTTC 2755 || ||||||||| | ||||| |||||||| | |||||| || || || || |||| Sbjct 1080 CGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTT 1139 Query 2756 TATATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAGCTGGCGTT 2815 ||| | || |||||||| | |||||| || | | ||| | |||||||| | ||| ||| Sbjct 1140 TATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTT 1199 Query 2816 AATGCCACTCCTCTCGCACCTGTT---ACTACTGCCTCTGGCTGGGATGCTTCTGCCTAT 2872 ||||||||||||||| | ||||| ||||||| | | || | | || | | Sbjct 1200 AATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTAT---ATTGACCATGCCGCTTTT 1256 Query 2873 CTTGGCACTATTCCATCCTCAAACC-TCAAGGTTCCTAAATTCTTACATCAAGGATACCT 2931 |||||||| ||| | ||| | ||| || | ||||| || ||| || || | Sbjct 1257 CTTGGCACGATT-AACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTT 1315 Query 2932 TAATATTTACAACAACTACTTTAAGCCACCGTGGGATG-CTGACCTTACATACGCTAACC 2990 ||||| || |||||||| ||||| | |||| ||||| |||||| ||| | ||||||| Sbjct 1316 GAATATCTATAACAACTATTTTAAAGCGCCGT-GGATGCCTGACCGTACCGAGGCTAACC 1374 Query 2991 CATCTAACATGCCTGAACAGGATTA---TAAATGGGGCGTTCG-TGTCGCTAACTTAAAA 3046 |||| || | | || ||| | | | || | || || || | || |||| Sbjct 1375 ---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAA 1431 Query 3047 TCTATCTGGACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGACCACTGGC 3106 | || ||||| || || | |||||| | || | || ||||| ||| Sbjct 1432 AC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCT 1490 Query 3107 GCTACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAA 3166 | || |||||||| |||||||| |||||||||||||||||||| ||||| || | ||| Sbjct 1491 ACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAA 1550 Query 3167 GAACGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACC 3226 |||||||| ||||||||| || || | ||| |||| || |||||| | ||| Sbjct 1551 GAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACC 1610 Query 3227 TCCTATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGC 3286 || ||||||| ||| ||||||||| | || | ||||||||| | | ||||| |||||| Sbjct 1611 TCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGC 1670 Query 3287 TATGACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAA 3346 ||||| || || || ||||||||| | || ||||| ||||| || ||||| || ||||| Sbjct 1671 TATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAG 1730 Query 3347 ACATTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTATGACTCTC 3406 || | || || || || || |||| ||| ||||| || ||| || | ||||| Sbjct 1731 ACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTT 1790 Query 3407 GCCGTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGTCGGTAAAG 3464 || || ||| || || |||||| | ||| ||||| || || ||| || ||||| Sbjct 1791 GCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAG 1848 Query 3465 AATCTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACCTGCCTCCG 3523 |||| || |||||||| | || ||||||||| | | |||||| ||| |||| ||| Sbjct 1849 GTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCG 1907 Query 3524 CGCGAAGTATCCCTTAAGGAATTCTTCCACTCCTCGCCGGACTCCGCT---AAGTTCAAA 3580 || ||| | || | ||||| | |||| | || | || || || ||||| || Sbjct 1908 CGTGAAATTTCTATGAAGGATGTTTTCC-GTTCTGG--TGATTCGTCTAAGAAGTTTAAG 1964 Query 3581 ATTGCCGAGGGCCAATGGTATCG-CACGCAGCCT--GACCGCGTCGCATTCCCTTATAAC 3637 ||||| ||||| || |||||||| | || |||| | | || | | ||||| || Sbjct 1965 ATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCTTCGTATGTTTCTCCT--GCTTATCAC 2021 Query 3638 GCACTTGACGGCTTTCCTTTCTACTC-TGCTCTGCCGTCTACTGACTTAAAACAACGTGT 3696 ||||| ||||| || ||| | || | | ||| ||| ||| || || |||| || Sbjct 2022 CTTCTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT 2080 Query 3697 CCTAGTTAACACTGATAACTACGACGAAATCTTTCAGTCTATGCAACTCGCACACTGGAA 3756 || || | || | || ||| | || ||||| | || | || ||||| Sbjct 2081 ACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAA 2140 Query 3757 TATGCAAACTAAATTTAATACTACCGTCTATAGACATATGCCTACGACTCGTGATTCAAT 3816 || || |||||||||| ||||| ||| | || |||| || ||||| |||||||| Sbjct 2141 TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAAT 2200 Query 3817 CATGACGTC 3825 |||||| || Sbjct 2201 CATGACTTC 2209 Score = 203 bits (224), Expect = 1e-48 Identities = 538/808 (67%), Gaps = 44/808 (5%) Strand=Plus/Plus Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197 ||||||||| | || || ||||| | || | | ||| | |||||||||| | |||| Sbjct 2530 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 2589 Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257 || | |||||||||||| || | | | | ||| | || | || ||| ||| Sbjct 2590 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 2643 Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317 ||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| | Sbjct 2644 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 2703 Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375 |||||| | | || | | | | | ||||| |||| ||||| || | ||| || Sbjct 2704 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 2761 Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435 | ||| | | ||| | | ||| ||| | | ||| || |||||||| | Sbjct 2762 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 2818 Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494 || || | | |||||| || ||||| | |||| ||| |||||||||||| || | Sbjct 2819 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 2875 Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554 |||||||||| || || |||||||||| || ||| ||| ||||| ||||||| Sbjct 2876 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 2935 Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAATAACGTA- 4610 || ||| |||| |||| ||||||||||||| || ||| | | |||||| ||| Sbjct 2936 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAG 2995 Query 4611 --ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCACCCAATG 4668 || || |||||||||||| ||||| || ||||||||||||||| || || Sbjct 2996 GCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC 3049 Query 4669 GCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA-GACGCC 4727 | | || | || | | | |||| || | | | ||| | |||| ||| ||| | Sbjct 3050 CTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTC 3109 Query 4728 CT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAAAAAATCG 4776 | | | | | || ||||| ||| ||| | |||| | | || | | Sbjct 3110 TTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTG 3169 Query 4777 GACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTG 4833 |||| | || |||| ||||||||||| ||||| || |||||||||||| ||| Sbjct 3170 GACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTG 3229 Query 4834 CATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGG 4893 |||| || || || || | ||||| |||||||| |||| |||||| |||||||| |||| Sbjct 3230 CATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG 3289 Query 4894 TTGACGCTGGCTTCCAAAACCAAAAAGA 4921 ||||||| || || | || |||||||| Sbjct 3290 TTGACGCCGGATTTGAGAATCAAAAAGA 3317 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 3409 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 3468 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 3469 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 3528 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 3529 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 3588 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 3589 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 3638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442999294180