Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_007817.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq716 960 0.0
>seq716
Length=4292
Score = 960 bits (1064), Expect = 0.0
Identities = 1567/2229 (70%), Gaps = 92/2229 (4%)
Strand=Plus/Plus
Query 1664 GCAGGAATTACTGCTACTCACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGA 1723
|||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 6 GCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGA 65
Query 1724 AGAAATTCAATCTGAACTTAAAAAATTCGAGAAGCTCTTACTTCGCCACCTTTCGCCATC 1783
|||||| | || ||| | ||||||||||||||||| || |||||||||||||
Sbjct 66 GAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC 125
Query 1784 ACCTGAACG-TACTGGCAAAGACTGACGCTCTCGACGAGGAAAAATACCTAAATATGCTA 1842
| || |||| | ||| |||| |||||||| | || ||||| || | || ||||||||
Sbjct 126 AACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT 184
Query 1843 GGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACATGGTAAACAATCA 1902
|| | || ||||||||||||| | || || |||||| || ||||||| | | ||
Sbjct 185 GGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCT 244
Query 1903 ATGCTTGACTTATTAAATGAACGTGGACTATTATCCACATCAA--------CAACCAACC 1954
| ||||| | ||||| || |||||| || |||| || |||||| |
Sbjct 245 CTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCA--C 302
Query 1955 CAAAAGGAAATACAAAATGA---ACTCTAACGAATCTGCTGTTGCCTTCGCTACTGCTCT 2011
|| ||| || | | |||| | || ||| | || ||| || ||| |
Sbjct 303 TAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTT 362
Query 2012 CGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAGACGACTTCGA 2071
|| ||||| ||||||||||||||||| | || |||| | |||||||| || |||||
Sbjct 363 GGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGA 422
Query 2072 TTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTCGCCGCGCTAT 2131
||| | || || || || |||||||| ||||||||||| |||||||| ||| |
Sbjct 423 TTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGT 482
Query 2132 TGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTCCTGCTCCTGT 2191
|||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 483 TGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGT 542
Query 2192 TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCCAGACAGCATG 2251
|||||||||||||||||||||||||||||||||||||||||| ||||| || || || ||
Sbjct 543 TGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTG 602
Query 2252 TCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGACCAGCCAGT 2311
||| || ||||||||||| || || || ||||| ||||| ||||| | || | || ||
Sbjct 603 TCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGT 662
Query 2312 TAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACTGACCATGT 2371
||| ||||||||| | ||||| |||||| ||||||||||||| |||||||||||| | |
Sbjct 663 TAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCT 722
Query 2372 TACACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATGTAATGGCT 2431
||| | |||||| ||||| ||| || |||||||||| ||||||| |||||||| ||
Sbjct 723 TACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCT 782
Query 2432 AAA---------------GGCTCTCG---TCGGCGTTC---GCCGTCCCG-----CT--- 2462
||| ||| |||| | | ||| | ||||| || ||
Sbjct 783 AAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAA 842
Query 2463 -------CTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTTCTAGG 2515
|||||| ||||| || |||||||| || || |||||| ||| || |||
Sbjct 843 GGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA--TTGCAGG 900
Query 2516 GGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGACCGC 2575
||||||||||||| || || |||||| | |||||||| |||||||| ||| || ||
Sbjct 901 GGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGT 959
Query 2576 ATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAACT 2635
|| || | |||||||| || || | |||| |||||| | || || ||| | | ||
Sbjct 960 ATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACC 1019
Query 2636 ATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTATT 2695
|| || ||||| ||| ||||||||||||| || || | || || |||||| |
Sbjct 1020 ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC 1079
Query 2696 CGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTTC 2755
|| ||||||||| | ||||| |||||||| | |||||| || || || || ||||
Sbjct 1080 CGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTT 1139
Query 2756 TATATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAGCTGGCGTT 2815
||| | || |||||||| | |||||| || | | ||| | |||||||| | ||| |||
Sbjct 1140 TATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTT 1199
Query 2816 AATGCCACTCCTCTCGCACCTGTT---ACTACTGCCTCTGGCTGGGATGCTTCTGCCTAT 2872
||||||||||||||| | ||||| ||||||| | | || | | || | |
Sbjct 1200 AATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTAT---ATTGACCATGCCGCTTTT 1256
Query 2873 CTTGGCACTATTCCATCCTCAAACC-TCAAGGTTCCTAAATTCTTACATCAAGGATACCT 2931
|||||||| ||| | ||| | ||| || | ||||| || ||| || || |
Sbjct 1257 CTTGGCACGATT-AACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTT 1315
Query 2932 TAATATTTACAACAACTACTTTAAGCCACCGTGGGATG-CTGACCTTACATACGCTAACC 2990
||||| || |||||||| ||||| | |||| ||||| |||||| ||| | |||||||
Sbjct 1316 GAATATCTATAACAACTATTTTAAAGCGCCGT-GGATGCCTGACCGTACCGAGGCTAACC 1374
Query 2991 CATCTAACATGCCTGAACAGGATTA---TAAATGGGGCGTTCG-TGTCGCTAACTTAAAA 3046
|||| || | | || ||| | | | || | || || || | || ||||
Sbjct 1375 ---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAA 1431
Query 3047 TCTATCTGGACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGACCACTGGC 3106
| || ||||| || || | |||||| | || | || ||||| |||
Sbjct 1432 AC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCT 1490
Query 3107 GCTACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAA 3166
| || |||||||| |||||||| |||||||||||||||||||| ||||| || | |||
Sbjct 1491 ACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAA 1550
Query 3167 GAACGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACC 3226
|||||||| ||||||||| || || | ||| |||| || |||||| | |||
Sbjct 1551 GAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACC 1610
Query 3227 TCCTATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGC 3286
|| ||||||| ||| ||||||||| | || | ||||||||| | | ||||| ||||||
Sbjct 1611 TCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGC 1670
Query 3287 TATGACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAA 3346
||||| || || || ||||||||| | || ||||| ||||| || ||||| || |||||
Sbjct 1671 TATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAG 1730
Query 3347 ACATTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTATGACTCTC 3406
|| | || || || || || |||| ||| ||||| || ||| || | |||||
Sbjct 1731 ACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTT 1790
Query 3407 GCCGTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGTCGGTAAAG 3464
|| || ||| || || |||||| | ||| ||||| || || ||| || |||||
Sbjct 1791 GCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAG 1848
Query 3465 AATCTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACCTGCCTCCG 3523
|||| || |||||||| | || ||||||||| | | |||||| ||| |||| |||
Sbjct 1849 GTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCG 1907
Query 3524 CGCGAAGTATCCCTTAAGGAATTCTTCCACTCCTCGCCGGACTCCGCT---AAGTTCAAA 3580
|| ||| | || | ||||| | |||| | || | || || || ||||| ||
Sbjct 1908 CGTGAAATTTCTATGAAGGATGTTTTCC-GTTCTGG--TGATTCGTCTAAGAAGTTTAAG 1964
Query 3581 ATTGCCGAGGGCCAATGGTATCG-CACGCAGCCT--GACCGCGTCGCATTCCCTTATAAC 3637
||||| ||||| || |||||||| | || |||| | | || | | ||||| ||
Sbjct 1965 ATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCTTCGTATGTTTCTCCT--GCTTATCAC 2021
Query 3638 GCACTTGACGGCTTTCCTTTCTACTC-TGCTCTGCCGTCTACTGACTTAAAACAACGTGT 3696
||||| ||||| || ||| | || | | ||| ||| ||| || || |||| ||
Sbjct 2022 CTTCTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGT 2080
Query 3697 CCTAGTTAACACTGATAACTACGACGAAATCTTTCAGTCTATGCAACTCGCACACTGGAA 3756
|| || | || | || ||| | || ||||| | || | || |||||
Sbjct 2081 ACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAA 2140
Query 3757 TATGCAAACTAAATTTAATACTACCGTCTATAGACATATGCCTACGACTCGTGATTCAAT 3816
|| || |||||||||| ||||| ||| | || |||| || ||||| ||||||||
Sbjct 2141 TAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAAT 2200
Query 3817 CATGACGTC 3825
|||||| ||
Sbjct 2201 CATGACTTC 2209
Score = 203 bits (224), Expect = 1e-48
Identities = 538/808 (67%), Gaps = 44/808 (5%)
Strand=Plus/Plus
Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197
||||||||| | || || ||||| | || | | ||| | |||||||||| | ||||
Sbjct 2530 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 2589
Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257
|| | |||||||||||| || | | | | ||| | || | || ||| |||
Sbjct 2590 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 2643
Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317
||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| |
Sbjct 2644 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 2703
Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375
|||||| | | || | | | | | ||||| |||| ||||| || | ||| ||
Sbjct 2704 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 2761
Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435
| ||| | | ||| | | ||| ||| | | ||| || |||||||| |
Sbjct 2762 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 2818
Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494
|| || | | |||||| || ||||| | |||| ||| |||||||||||| || |
Sbjct 2819 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 2875
Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554
|||||||||| || || |||||||||| || ||| ||| ||||| |||||||
Sbjct 2876 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 2935
Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAATAACGTA- 4610
|| ||| |||| |||| ||||||||||||| || ||| | | |||||| |||
Sbjct 2936 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAG 2995
Query 4611 --ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCACCCAATG 4668
|| || |||||||||||| ||||| || ||||||||||||||| || ||
Sbjct 2996 GCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC 3049
Query 4669 GCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA-GACGCC 4727
| | || | || | | | |||| || | | | ||| | |||| ||| ||| |
Sbjct 3050 CTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTC 3109
Query 4728 CT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAAAAAATCG 4776
| | | | | || ||||| ||| ||| | |||| | | || | |
Sbjct 3110 TTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTG 3169
Query 4777 GACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTG 4833
|||| | || |||| ||||||||||| ||||| || |||||||||||| |||
Sbjct 3170 GACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTG 3229
Query 4834 CATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGG 4893
|||| || || || || | ||||| |||||||| |||| |||||| |||||||| ||||
Sbjct 3230 CATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG 3289
Query 4894 TTGACGCTGGCTTCCAAAACCAAAAAGA 4921
||||||| || || | || ||||||||
Sbjct 3290 TTGACGCCGGATTTGAGAATCAAAAAGA 3317
Score = 167 bits (184), Expect = 8e-38
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072
|| || || ||||| || || || ||||| ||||| |||||||| | ||| | ||
Sbjct 3409 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 3468
Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132
|| || |||| | ||||||| |||||| | |||||||| | || |||| |||||
Sbjct 3469 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 3528
Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192
|| ||| || |||||||| || |||||||||||||||||||| || ||||| |||||
Sbjct 3529 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 3588
Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242
|| |||||||||||||||||| | || || || ||| ||||||| ||||
Sbjct 3589 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 3638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17442999294180
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