Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq716 1052 0.0 >seq716 Length=4292 Score = 1052 bits (1166), Expect = 0.0 Identities = 1681/2385 (70%), Gaps = 121/2385 (5%) Strand=Plus/Plus Query 1666 TAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAA 1725 ||| ||||||||| || |||| |||||| |||||||||||||||||||||| ||||| Sbjct 2 TAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAA 61 Query 1726 ATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGC 1785 |||| || ||| | || ||| | |||||| |||||||| || ||||||||| Sbjct 62 ATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGC 121 Query 1786 CATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATAT 1844 ||||| || |||| | | |||| ||||||||| | ||||| || || ||||| ||||| Sbjct 122 CATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATAT 180 Query 1845 GATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGA 1904 | | ||| | | | ||||||||||| | ||||| |||||| || ||||| | ||| Sbjct 181 GCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGA 240 Query 1905 ATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCTTA 1962 || | |||||||| |||| || ||||| || |||| | | ||| | | | Sbjct 241 TTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGT---CCGATGCTGTTCA 297 Query 1963 ACTTACAA-AGGAATCAAAA-ATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAACC 2017 || || ||| | ||| |||| ||| | ||| | | ||| || || ||| Sbjct 298 ACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACC 357 Query 2018 GCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACGAT 2077 ||| | ||||| || || || |||||||| ||| | ||| | || | || || || ||| Sbjct 358 GCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGAT 417 Query 2078 TTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCTCGCCGC 2137 ||||| || | || || || || |||||||| ||||||||||| |||||||| ||| Sbjct 418 TTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGC 477 Query 2138 GCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTTCCTGCT 2197 ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 478 TGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCT 537 Query 2198 CCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATTCAAACG 2257 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 538 CCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACG 597 Query 2258 GCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGATGCC 2317 || ||||| || ||||||||||||||||| || |||||||| |||||||| ||||| Sbjct 598 GCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGT 657 Query 2318 CCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAACACTGAG 2377 |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 658 CCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGAC 717 Query 2378 CTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTGATG-GA 2436 || ||||| |||||||| | || | |||| ||||| | || || ||||||||||| | Sbjct 718 GTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAA 777 Query 2437 TGTC------TAAAAAATCTATTCGC---CGCTCTGGT---------------------- 2465 |||| ||||||| | | || ||| ||||| Sbjct 778 TGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTA 837 Query 2466 -----GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTC 2520 ||||| |||||| ||||| || |||||||| || || |||||| |||| | Sbjct 838 CTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGC 897 Query 2521 TAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTG 2580 |||||||||||||||| || || |||||| | |||||||| | |||||| ||| | Sbjct 898 --AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCG 954 Query 2581 AACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTA 2640 | ||||| ||||||||||| || ||||| | ||| |||||| | || || || |||| Sbjct 955 AGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTA 1014 Query 2641 AAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGGTAGGCG 2700 || || || ||||| ||| ||||||| || || | ||| | || || |||| Sbjct 1015 TTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCG 1074 Query 2701 CTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTTTA 2760 || | ||||||||||| | |||||||| || ||| | |||||| || ||| | |||| Sbjct 1075 CTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTA 1134 Query 2761 CTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGAAGACTG 2820 |||| ||| ||||||||||||| || |||||| |||| |||||| | || |||||| || Sbjct 1135 CTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATG 1194 Query 2821 GCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTCCTCTGGCT---GGGATTCTGCT 2876 | ||||| || |||||||| | | | |||| | |||| | || ||| Sbjct 1195 GTGTTAATGCCACTCCTCTCCCGACTGTTAAC----ACTACTGGTTATATTGACCATGCC 1250 Query 2877 GCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAAGGTTCCTAA--ATTCCTTCATC 2931 || | ||||||||| || ||| || ||| || | ||||| ||| || || Sbjct 1251 GCTTTTCTTGGCACGATTAACCCTGATACCAAT---AAAATCCCTAAGCATTTGTT--TC 1305 Query 2932 AATCTTATCTCAATATTTACAACAACTACTTTAAGCCGCCGTGGTCTAATGACCTCACCT 2991 | |||| | ||||| || |||||||| ||||| |||||||| ||||| ||| Sbjct 1306 AGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCG 1365 Query 2992 ATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACAAATGGGGCGTTC--GTGTCGCT 3047 | ||||||| ||||| || | | ||| | | | | ||| || || Sbjct 1366 AGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCC 1422 Query 3048 AACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGATTCATTAAC-TAAGCAGGATAT 3106 | || |||| | || ||||| || || ||||||||||| | | | | | | | || Sbjct 1423 ATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTCTCGCCAAAT 1480 Query 3107 GACTACTGGCGCTACCA---CTATCGATATTATGGGCCTACAAGCTGCCTATGCTAAACT 3163 ||| ||| |||||| |||| || |||||||| || |||||||| |||||||| | Sbjct 1481 GACGACT---TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTT 1537 Query 3164 CCACACTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATATTATGAAAGACTT 3223 || ||||| || |||||||| || |||||| || |||| ||| |||| || Sbjct 1538 GCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATT 1597 Query 3224 TGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCGCTCTGAATT 3283 ||| ||| | ||||| || |||| ||| ||||||||| | || | ||||||||| | | Sbjct 1598 TGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCT 1657 Query 3284 TTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCAGTTCTCTGG 3343 ||||| ||||||||||| || || || ||||||||||| || || || ||||| ||||| Sbjct 1658 CTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGG 1717 Query 3344 TCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGAGCATGGCGT 3403 ||| || ||||| |||| ||| ||| ||||| || |||| |||||||||||||||| Sbjct 1718 TCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCAC 1777 Query 3404 AATTATGACTTTATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAAATGCACTAT 3461 || | ||| | | || ||| || || |||||| || ||| || || || || Sbjct 1778 TATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTAC 1835 Query 3462 CTCGTCGGTAAGGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCTCT-TATGGC 3520 || || ||| | || |||||||||| || ||||| | ||||||| | | |||||| Sbjct 1836 CTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC 1895 Query 3521 TAACCTGCCTCCGCGTGAAATTGAGGTAAAAGACCTCTTTCACTCTGCTGGT---ACTGG 3577 ||| |||| |||||||||||| | || || | || | |||| || | || Sbjct 1896 -AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAA 1954 Query 3578 TAAATTCAAAATTGCCGAAGGTCAATGGTATCGTACTCAGCCTGACCGCGTTGCCTTCC- 3636 || || || ||||| || ||||| ||||||||| | |||| ||| | ||| Sbjct 1955 GAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC--TCCT 2012 Query 3637 -CTTATAACGCTCTTGACGGCTTCCCTTTCTATTC-TGAACTGCCGTCTAATGATATTCT 3694 ||||| || |||||| |||||||| ||| |||| |||| ||| ||| |||| | | Sbjct 2013 GCTTATCACCTTCTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCA 2071 Query 3695 CGAACGTGTACTTGTTCGAACTGATAACTATGATGAAATCTTCCAGTCTATGCAACTTGC 3754 ||||| |||||| |||| || | ||||| | |||||||| | || | Sbjct 2072 AGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 2131 Query 3755 ACACTGGAACATGCAAACTAAATTTAACACTACTGTATATCGTCATATGCCTACCACTCG 3814 || ||||| | || ||||||||| || || ||||| || |||| |||||||| Sbjct 2132 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 2191 Query 3815 TGATGGCATCATGA---CGTCATAAAA---------------CAAAACGTTGAACGGGTA 3856 ||| ||||||| ||| |||||| | |||| ||| |||| Sbjct 2192 CGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTA 2251 Query 3857 CAAATTTTAATTTGTGCCTGTTCAAGGTTGAACAAGCGAAGCGCGTTAGCTAACTTACTT 3916 |||||||||||| |||| | |||||| ||||||||||||| ||| | | ||| Sbjct 2252 AAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTT 2311 Query 3917 AAGGAAATT-CTCATGTTTCAAACTTATCTCTCTAAACATAATTC 3960 |||| || |||||||||| |||| | | ||| |||||||| Sbjct 2312 -AGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTC 2355 Score = 179 bits (198), Expect = 1e-41 Identities = 658/1047 (63%), Gaps = 71/1047 (7%) Strand=Plus/Plus Query 4445 CTCCAACCTCTTAAATAAGGTCTAATCTATGTTCGGTGCAATCGCTGGCGGTATCGCCTC 4504 ||||| || ||||| | |||| || |||||| ||||| || ||||||||||| || || Sbjct 2834 CTCCAGCCACTTAAGTGAGGTG--ATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTC 2891 Query 4505 CTCTCTCGCTGGTGGACTCCTGAACAAAGCATTCGGGGGCGGTTCTTCCGCTCCCCAATC 4564 |||| |||||||| | || ||| || || |||||| || || Sbjct 2892 TGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGG 2951 Query 4565 TGGCGTTCAAGGTAATGTCCTCGCTACTGA---CAATAATGTA---ATCGGTGCTAATGA 4618 |||| |||||||| |||| || ||||| || ||||| |||| || |||| | Sbjct 2952 TGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTG------A 3005 Query 4619 TGCTGGTATCAAATCCGCTATTCAGGGTTCTAATCCTCCCAATGGTCAACAAGCTGCTCC 4678 ||||||||| ||||| || ||||| || |||||| ||| || | | | || | || Sbjct 3006 TGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGTCCC 3065 Query 4679 CAATGCTATATCGGGCGTTCTTGCCGATACTGGCAAAG-ACGCCCT--ATCTTCAAT-CA 4734 | | | | || || | | | || | |||| |||| || | | | | | | || Sbjct 3066 TAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCA 3125 Query 4735 --CTGGCGCT---GGCGTTA---ATAAACTTATGGAAAAAATCGGACTCTCTA--AAGA- 4783 ||||| || | |||| |||| | | || | ||||| | ||| Sbjct 3126 GGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTC 3185 Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 3186 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 3245 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 3246 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 3305 Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963 || ||||| || | ||| ||||| || ||| Sbjct 3306 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 3365 Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023 || ||||| | ||||| || || ||||| || Sbjct 3366 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 3425 Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083 ||| || ||||| ||||| || ||||| || | || || || |||| | || Sbjct 3426 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 3485 Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143 ||||| ||||| | |||||||| | || |||| ||||| || ||| || ||||| Sbjct 3486 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 3545 Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203 ||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| | Sbjct 3546 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 3605 Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGATGCTGTTCGTGCTAACACTGAACGTAC 5263 |||| | ||||| ||||| | ||||| |||| |||| | || | Sbjct 3606 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC-----ATCA--------GC 3652 Query 5264 ACATGTAGAAACGGACCGCTCTAAGCAGGAGGTCCAAAACTCTCGTTACGCTTCCTCACA 5323 | | | |||| | | || || | || || || Sbjct 3653 AAACGCAGAATCAG-----------------------------CGGTATGGCTCTTCTCA 3683 Query 5324 AGTCGGTAAAACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGT 5383 | || || || |||||| | || |||||| | | ||| || |||||||| | || Sbjct 3684 TATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGT 3743 Query 5384 TGATTATTTTCGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGA 5443 |||| ||||| ||| ||||||||||||| || |||||||||||||||| | ||||| Sbjct 3744 TGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGA 3803 Query 5444 TGGCAAATCGGATGGGATAAGCTCAAA 5470 || ||| | ||||| || |||| || Sbjct 3804 CGGTAAAGCTGATGGTATTGGCTCTAA 3830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442999294180