Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001741.1 Length=4877 Score E Sequences producing significant alignments: (Bits) Value seq3044 116 1e-22 >seq3044 Length=1521 Score = 116 bits (128), Expect = 1e-22 Identities = 165/227 (73%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 4532 CGTTCAAGTTTTGATCGGTCTCACGGTTATAAGACTACGTTTGATATGGATTATTTAGTT 4591 ||||| ||||||||| |||| ||||| |||||||| ||| | |||| | ||| Sbjct 842 CGTTCTTCTTTTGATCGTACTCATGGTTACAAGACTACTTTTTCGTCAGGTTATCTTGTT 901 Query 4592 CCATTTTTTGTTGATGAAGTTCTTCCTGGAGATACTTTTTCTTT--ATCGGAGACGCATC 4649 ||| ||||| |||||| | |||||| || || |||||| | | || || | || | Sbjct 902 CCAGTTTTTTGTGATGAGGCTCTTCCCGGCGACACTTTTACGCTCGATTTGACA-GCGTT 960 Query 4650 TTTGTCGTTTGACTACGTTAGTTCAACCGATTATGGATAATATTCAGTTAACTACTCAGT 4709 | | |||| || ||||| || | || |||||||||| | | ||| ||||| | Sbjct 961 TGT-TCGTATGGCTACGCCTATTTATCCCGTTATGGATAACTTATATTTAGACACTCACT 1019 Query 4710 TTTTCTTTGTTCCCAATCGTTTGCTTTGGGATAATTGGGAATCGTTT 4756 ||||||||||||| |||||||||| ||| ||||||||||| ||||| Sbjct 1020 TTTTCTTTGTTCCTTATCGTTTGCTCTGGAATAATTGGGAA-CGTTT 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15493789399590