Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_002180.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value seq3044 123 7e-25 >seq3044 Length=1521 Score = 123 bits (136), Expect = 7e-25 Identities = 308/464 (66%), Gaps = 13/464 (3%) Strand=Plus/Plus Query 194 TCTTTCGCGCAAGTTCCATCAGCGCGAATTCAGAGAAGTTCTTTTGATAGATCTTGTGGT 253 ||||| || |||||||| || || |||| | |||||||||| | || |||| Sbjct 810 TCTTT-GCTCAAGTTCCGTCTGCTGATATTCCTCGTTCTTCTTTTGATCGTACTCATGGT 868 Query 254 TTAAAGACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGCGATGAAGTTCTCCCT 313 | |||||||| || | ||||| || | || | ||||| ||||| | ||| || Sbjct 869 TACAAGACTACTTTTTCGTCAGGTTATCTTGTTCCAGTTTTTTGTGATGAGGCTCTTCCC 928 Query 314 GGAGATACTTT----CTCC--TTGAAAGAGGCGTTTTTAGCACGTATGGCTACGCCTATC 367 || || ||||| ||| |||| || ||||| | ||||||||||||||||| Sbjct 929 GGCGACACTTTTACGCTCGATTTGACAG---CGTTTGTT---CGTATGGCTACGCCTATT 982 Query 368 TTTCCTCTTATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTT 427 | ||| |||||||||| || |||||| || || | ||||||||||||| ||| | Sbjct 983 TATCCCGTTATGGATAACTTATATTTAGACACTCACTTTTTCTTTGTTCCTTATCGTTTG 1042 Query 428 ATATGGTCGAATTTCCAAAAGTTCTGTGGAGAACAAGATAATCCTGGAGATTCCACAGAT 487 | ||| |||| || || || | ||||| |||||||| | ||| || ||| Sbjct 1043 CTCTGGAATAATTGGGAACGTTTTAACGGTGCTCAAGACAATCCTGGTGCTTCAACCGAT 1102 Query 488 TTTCTTACCCCAGTTTTAACCGCTCCTAGTGGGGGATTTACTGAAGGATCAATCCATGAT 547 | |||| || | || ||||||| ||| || | | || || || | |||| Sbjct 1103 TATCTTGTTCCTAAAATTACTGCTCCTACTGGTGGCTATTCTACTGGGTCTCTTTATGAC 1162 Query 548 TATCTTGGTCTACCTACTAAAGTTGCAGGAATTGAATGTGTTGCGTTCTGGCACAGAGCT 607 ||| ||||||| ||||| |||||||| || |||| | || || || ||||| Sbjct 1163 TATTTTGGTCTTCCTACGAAAGTTGCTGGTTTTGATCATTCGGCTTTGCCGCTTCGAGCT 1222 Query 608 TACAATTTGATTTGGAACCAGTACTATCGTGATGAGAATATTCA 651 ||||| | |||| ||| | | | ||||| || ||| |||| Sbjct 1223 TACAACCTCATTTACAACGAATGGTTCCGTGACGAAAATCTTCA 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14389832905815