Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_002194.1 Length=4563 Score E Sequences producing significant alignments: (Bits) Value seq3044 127 6e-26 >seq3044 Length=1521 Score = 127 bits (140), Expect = 6e-26 Identities = 388/595 (65%), Gaps = 16/595 (3%) Strand=Plus/Plus Query 40 TCTTTCGCGCAAGTCCCGTCAGCGCGAATTCAGAGAAGTTCTTTTGATAGATCTTGTGGT 99 ||||| || ||||| ||||| || |||| | |||||||||| | || |||| Sbjct 810 TCTTT-GCTCAAGTTCCGTCTGCTGATATTCCTCGTTCTTCTTTTGATCGTACTCATGGT 868 Query 100 TTAAAAACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGCGATGAAGTTCTCCCT 159 | || ||||| || | ||||| || | || | ||||| ||||| | ||| || Sbjct 869 TACAAGACTACTTTTTCGTCAGGTTATCTTGTTCCAGTTTTTTGTGATGAGGCTCTTCCC 928 Query 160 GGAGATACTTT----CTCC--TTGAAAGAGGCGTTTTTAGCACGTATGGCAACGCCTATC 213 || || ||||| ||| |||| || ||||| | |||||||| |||||||| Sbjct 929 GGCGACACTTTTACGCTCGATTTGACAG---CGTTTGTT---CGTATGGCTACGCCTATT 982 Query 214 TTTCCTCTTATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTG 273 | ||| |||||||||| || |||||| || || | ||||||||||||| ||| || Sbjct 983 TATCCCGTTATGGATAACTTATATTTAGACACTCACTTTTTCTTTGTTCCTTATCGTTTG 1042 Query 274 TTATGGTCGAATTTCCAAAAGTTCTGTGGAGAACAAGATAATCCTGATGATTCTACAGAT 333 | ||| |||| || || || | ||||| ||||||| || ||| || ||| Sbjct 1043 CTCTGGAATAATTGGGAACGTTTTAACGGTGCTCAAGACAATCCTGGTGCTTCAACCGAT 1102 Query 334 TTTCTTACCCCCATTTTAACCGCTCCTGCTGGGGGATTTACTGAAGGATCGATCCATGAT 393 | |||| || | | || |||||| |||| || | | || || || | |||| Sbjct 1103 TATCTTGTTCCTAAAATTACTGCTCCTACTGGTGGCTATTCTACTGGGTCTCTTTATGAC 1162 Query 394 TATCTTGGTCTACCTACTAAAGTTGCTGGAGTTCAATGTGTTGCGTTCTGGCACAGAGCT 453 ||| ||||||| ||||| ||||||||||| || | | || || || ||||| Sbjct 1163 TATTTTGGTCTTCCTACGAAAGTTGCTGGTTTTGATCATTCGGCTTTGCCGCTTCGAGCT 1222 Query 454 TACAATTTGATTTGGAACCAGTACTATCGCGACGAAAACATTCAGGAATCTGTTGAAGTG 513 ||||| | |||| ||| | | | || |||||||| |||| | || || | Sbjct 1223 TACAACCTCATTTACAACGAATGGTTCCGTGACGAAAATCTTCAAAATTCGGTCTTGGAA 1282 Query 514 CAGATGGGAGATACTACTACAGATGAAGTGAACAATTATACGCTTCTTAAGCGCGGGAAG 573 | | || ||| | || ||||| |||| ||| ||| ||||| || Sbjct 1283 AACGTTGGTGATGGTCCT---GATGATCCTGCTAATTTCGTGCTCCTTCGTCGCGGTAAA 1339 Query 574 CGTTATGATTACTTCACTTCATGTCTCCCTTGGCCACAAAAAGGTCCTGCAGTAA 628 || | ||||| || ||||| | | |||||||| ||||| ||||| ||||||| Sbjct 1340 CGCCACGATTATTTTACTTCTGCTTTACCTTGGCCTCAAAAGGGTCCGGCAGTAA 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14489028996560