Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_027636.1 Length=4501 Score E Sequences producing significant alignments: (Bits) Value seq3044 147 6e-32 >seq3044 Length=1521 Score = 147 bits (162), Expect = 6e-32 Identities = 375/571 (66%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 52 GCGGATATTCCGCGTTCGTCGTTTGATAATTCAGACTACTCACAAGACTACGTTTGACGC 111 || |||||||| ||||| || |||||| | | | | | |||||||||| ||| | Sbjct 830 GCTGATATTCCTCGTTCTTCTTTTGATCGTACTCA-TGGTTACAAGACTACTTTTTCGTC 888 Query 112 CGGTTATTTGATTCCTATTTATGTTGATGAGATTCTTCCCGGCGATACTTTTAATTTGCA 171 |||||| | |||| ||| | ||||||| |||||||||||| ||||||| | | Sbjct 889 AGGTTATCTTGTTCCAGTTTTTTGTGATGAGGCTCTTCCCGGCGACACTTTTACGCTCGA 948 Query 172 GATGACTGCGTTTGCGCGTATGGCGACTCCGTTGTTTCCGTTGATGGATAATTTGTACAT 231 |||| ||||||| |||||||| || || | | ||| | |||||||| || || | Sbjct 949 TTTGACAGCGTTTGTTCGTATGGCTACGCCTATTTATCCCGTTATGGATAACTTATATTT 1008 Query 232 GGATTCGttttttttCTTTGTTCCGAATCGTTTGGTTTGGATTCATTGGAAGCAGTTCAT 291 || | |||||||||||||| |||||||| | |||| | ||||| | | || | Sbjct 1009 AGACACTCACTTTTTCTTTGTTCCTTATCGTTTGCTCTGGAATAATTGGGAACGTTTTAA 1068 Query 292 GGGTGAGCAGGATAATCCTGGTGATTCGATTTCTTACACTGTTCCTACGATGACTACGCC 351 |||| || || |||||||||| ||| | ||| |||||||| || ||| | || Sbjct 1069 CGGTGCTCAAGACAATCCTGGTGCTTCAACCGATTATCTTGTTCCTAAAATTACTGCTCC 1128 Query 352 TGCCTCGGGTTATACCCCTGGTAATTTGTTCGATTATTTTGGTCTGCCTACTATTGGTCA 411 | | || ||| | |||| | | | || ||||||||||| ||||| | | Sbjct 1129 TACTGGTGGCTATTCTACTGGGTCTCTTTATGACTATTTTGGTCTTCCTACGA------A 1182 Query 412 GGTCGGAGGTGGGAATACGGTTGTTCATAATTCGCTGCCGCTGCGTTGCTATAACTTGAT 471 || | ||| ||| |||| | ||||||| || || ||| | || Sbjct 1183 AGTTGCTGGT---------TTTGATCATTCGGCTTTGCCGCTTCGAGCTTACAACCTCAT 1233 Query 472 CTGGAATCAGTGGTTCCGTGATGAGAATTTGCAGAATTCTGTTCAGATTGACAATGGTGA 531 | || | ||||||||||| || ||| | || ||||| || | || |||||| Sbjct 1234 TTACAACGAATGGTTCCGTGACGAAAATCTTCAAAATTCGGTCTTGGAAAACGTTGGTGA 1293 Query 532 TGGGCCTGACAATCCGGTTAACTACAATTTGTGTCGGAGGGGTAAGCGTCATGATTATTT 591 ||| ||||| |||| | ||| | | | ||| | ||||| || || |||||||| Sbjct 1294 TGGTCCTGATGATCCTGCTAATTTCGTGCTCCTTCGTCGCGGTAAACGCCACGATTATTT 1353 Query 592 CACGTCGTCGCTTCCATGGCCGCAGAAGGGT 622 || || | | || ||||| || |||||| Sbjct 1354 TACTTCTGCTTTACCTTGGCCTCAAAAGGGT 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14290636815070