Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028993.1 Length=4468 Score E Sequences producing significant alignments: (Bits) Value seq3044 174 4e-40 >seq3044 Length=1521 Score = 174 bits (192), Expect = 4e-40 Identities = 409/609 (67%), Gaps = 40/609 (7%) Strand=Plus/Plus Query 53 TTCCGCACGCTGACATTCCGCGTGCTAAGTTTGATCGT---CA-GTTTACTCATAAGACG 108 ||||| ||||| ||||| ||| || ||||||||| || | |||| ||||| Sbjct 822 TTCCGTCTGCTGATATTCCTCGTTCTTCTTTTGATCGTACTCATGGTTAC----AAGACT 877 Query 109 ACTTTTGATGCTGGTTATCTTGTTCCTGTTTATGTGGATGAGGTTCTTCCCGGTGATACA 168 |||||| | |||||||||||||| |||| | ||||||| ||||||||| || || Sbjct 878 ACTTTTTCGTCAGGTTATCTTGTTCCAGTTTTTTGTGATGAGGCTCTTCCCGGCGACACT 937 Query 169 TTTAATTTGAATATGACTGCTTTTGCTCGTCTGGCTACTCCT-TTTTTCCTGTTATGGAT 227 |||| | || |||| || |||| |||| ||||||| ||| ||| ||| ||||||||| Sbjct 938 TTTACGCTCGATTTGACAGCGTTTGTTCGTATGGCTACGCCTATTTATCCCGTTATGGAT 997 Query 228 AATATGGTTTTGGATAGTCtttttcttttttGTTCCTAACCGTTTGATTTGGGATAACTG 287 || | ||| || | || ||| || ||||||||| | |||||| | ||| |||| || Sbjct 998 AACTTATATTTAGACACTCACTTT-TTCTTTGTTCCTTATCGTTTGCTCTGGAATAATTG 1056 Query 288 GCAAAAGTTT-ATGGTGAGCAGCGTAACCCTGGTGATTCGA-CTTCTATGTTGTTCCTCA 345 | || ||| | |||| || || ||||||| ||| | | ||| |||||||| | Sbjct 1057 GGAACGTTTTAACGGTGCTCAAGACAATCCTGGTGCTTCAACCGATTATCTTGTTCCTAA 1116 Query 346 ACAAGTTTCTCCCGCAGGTGGTTATGCTGTTGGTTCTTTGCAAGACTATATGGGTTTACC 405 | | |||| | ||||| ||| || ||| ||| | | |||||| | ||| | || Sbjct 1117 AATTACTGCTCCTACTGGTGGCTATTCTACTGGGTCTCTTTATGACTATTTTGGTCTTCC 1176 Query 406 AACTGTTGGTCAGGTTGGTGCTGGCAATACTATTTCCCATTGCGCTTTTTTAC-TCGTGC 464 || | | |||||| | || |||| ||||| | ||| || Sbjct 1177 TAC---------GAAAGTTGCTGG------TTTTGATCATTCGGCTTTGCCGCTTCGAGC 1221 Query 465 CTATAATCTTATTTGGAATGAATGGTTTAGAGATCAGAATTTACAAAATTCTGTAACCGT 524 || || || |||| || |||||||| | || | ||| | |||||||| || | | Sbjct 1222 TTACAACCTCATTTACAACGAATGGTTCCGTGACGAAAATCTTCAAAATTCGGT---CTT 1278 Query 525 TGATA---CTGGTGACGGTCCTGATGCGTCGGCTTCAACTAATTACACGTTGTTGCGCCG 581 || | |||||| ||||||||| | | | |||||| | | | | || || Sbjct 1279 GGAAAACGTTGGTGATGGTCCTGAT------GATCCTGCTAATTTCGTGCTCCTTCGTCG 1332 Query 582 TGGTAAGCGGCATGATTATTTTACTTCTGCACTTCCATGGCCTCAGAAGGGTTCTTCTGT 641 ||||| || || ||||||||||||||||| | || |||||||| |||||| | | || Sbjct 1333 CGGTAAACGCCACGATTATTTTACTTCTGCTTTACCTTGGCCTCAAAAGGGTCCGGCAGT 1392 Query 642 AACTTTGCC 650 || | |||| Sbjct 1393 AAATCTGCC 1401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14185040976535