Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028994.1 Length=4273 Score E Sequences producing significant alignments: (Bits) Value seq3044 111 4e-21 >seq3044 Length=1521 Score = 111 bits (122), Expect = 4e-21 Identities = 400/620 (65%), Gaps = 23/620 (4%) Strand=Plus/Plus Query 44 TTCCGAAGGCTGATATACCTCGGAGTTCATTTGACTGTCAGTCAACAC-ACAAAACTACT 102 ||||| |||||||| ||||| ||| ||||| || | ||| |||| |||||| Sbjct 822 TTCCGTCTGCTGATATTCCTCGTTCTTCTTTTGATCGT-ACTCATGGTTACAAGACTACT 880 Query 103 TTCGATGCCGGTT-TCTTAGTACCTGTATATGTAGATGAAATGTTGCCAGGCGATACTTT 161 || | |||| |||| || || || | | ||||| | || ||||| ||||| Sbjct 881 TTTTCGTCAGGTTATCTT-GTTCCAGTTTTTTGTGATGAGGCTCTTCCCGGCGACACTTT 939 Query 162 CCGCCTTAATATGACGGCATTTGCCCGTTTAGCAACTCCTCTTTATCCAATTATGGATAA 221 || || |||| || |||| ||| | || || ||| ||||||| |||||||||| Sbjct 940 TACGCTCGATTTGACAGCGTTTGTTCGTATGGCTACGCCTATTTATCCCGTTATGGATAA 999 Query 222 TATGCACTTAGATTCATTCTTTTTCTTTGTCCCAAATAGATTAATTTGGAACAATTGGCA 281 | | ||||| | |||||||||||| || || | || | ||||| |||||| | Sbjct 1000 CTTATATTTAGACACTCACTTTTTCTTTGTTCCTTATCGTTTGCTCTGGAATAATTGGGA 1059 Query 282 AAAATTTATGGGTCAACAAGCGAACCCTGATAGTTCGATTTCTTTTGTTGTACCCCAACA 341 | |||| ||| |||| || |||| | ||| | || | |||| || || Sbjct 1060 ACGTTTTAACGGTGCTCAAGACAATCCTGGTGCTTCAACCGATTATCTTGTTCCTAAA-- 1117 Query 342 AGTAT--CACCTGCTGGTGGATACGCTATTGGATCATTACAAGATTACATGGGTTTACCT 399 | || | ||| ||||||| || ||| ||| || | | || || | ||| | ||| Sbjct 1118 ATTACTGCTCCTACTGGTGGCTATTCTACTGGGTCTCTTTATGACTATTTTGGTCTTCCT 1177 Query 400 ACTGTTGGTCAAGTAGGTGCTGGTAATACAGTAAGCCATTGTGCTTTTTGGCCACGTGCT 459 || |||| | || | | || |||| ||||| || || ||| Sbjct 1178 ACGA------AAGTTGCTGGTTTTGAT---------CATTCGGCTTTGCCGCTTCGAGCT 1222 Query 460 TACAACCTTATATATAACGAGTGGTTTAGAGATGAAAATTTACAAAACTCTGTTACCGTT 519 |||||||| || || ||||| ||||| | || |||||| | ||||| || || | Sbjct 1223 TACAACCTCATTTACAACGAATGGTTCCGTGACGAAAATCTTCAAAATTCGGTCTTGGAA 1282 Query 520 GATCTTGGTGATGGCCCTGATACTGTTACTAACTATACTTTATTACGACGTGGAAAACGA 579 | |||||||||| |||||| | | |||| | | | || || || ||||| Sbjct 1283 AACGTTGGTGATGGTCCTGATGATCCTGCTAATTTCGTGCTCCTTCGTCGCGGTAAACGC 1342 Query 580 AAAGATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAAAGGTACTTCTGTAACGTTACCA 639 | ||||| ||||||||||| | |||||||||||||| ||| | | |||| | || Sbjct 1343 CACGATTATTTTACTTCTGCTTTACCTTGGCCTCAAAAGGGTCCGGCAGTAAATCTGCCT 1402 Query 640 TTAGGAACTTCTGCACCAGT 659 | || ||||||| ||||| Sbjct 1403 CTCGGCTCTTCTGCTCCAGT 1422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13561065567010