Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq145826 251 2e-63 seq45383 78.8 3e-11 >seq145826 Length=33368 Score = 251 bits (278), Expect = 2e-63 Identities = 142/144 (99%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 4788 ATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGC 4847 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5057 ATGCTGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGC 5116 Query 4848 CGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTT 4907 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5117 CGCCATTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTT 5176 Query 4908 CGCTACACGCAGGACGCTTTTTCA 4931 |||||||||||||||||||||||| Sbjct 5177 CGCTACACGCAGGACGCTTTTTCA 5200 >seq45383 Length=60323 Score = 78.8 bits (86), Expect = 3e-11 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1073 ATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTG 1115 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3912 ATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTG 3954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17091689860605