Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_003493.2 Length=2561 Score E Sequences producing significant alignments: (Bits) Value seq53636 80.6 4e-12 seq94435 77.0 5e-11 >seq53636 Length=169506 Score = 80.6 bits (88), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 277 TTTTCTATCTGGCCTATACCTTGTTCTTGAAGGACTGCATCCTTCTGTTCAAGGCGAAGA 336 ||| |||| |||||||| ||||| ||||||| ||||| | || |||||||| | || Sbjct 141705 TTTGCTATTTGGCCTATCAGTTGTTTGTGAAGGATTGCATATTGCTATTCAAGGCCA-GA 141647 Query 337 AG-CAGAGAACCACAACCGAAATCGGGTTTGGACAAAC 373 || || ||||||||||| |||||||| ||||| || || Sbjct 141646 AGACAAAGAACCACAACAGAAATCGGATTTGGTCAGAC 141609 >seq94435 Length=1291 Score = 77.0 bits (84), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 277 TTTTCTATCTGGCCTATACCTTGTTCTTGAAGGACTGCATCCTTCTGTTCAAGGCGAAGA 336 ||| |||| |||||||| ||||| ||||||| |||| | || |||||||| | || Sbjct 274 TTTGCTATTTGGCCTATCAGTTGTTTGTGAAGGATCGCATATTGCTATTCAAGGCCA-GA 216 Query 337 AG-CAGAGAACCACAACCGAAATCGGGTTTGGACAAACCCC 376 || || ||||||||||| |||||||| ||||| || || || Sbjct 215 AGACAAAGAACCACAACAGAAATCGGATTTGGTCAGACACC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8071944554254