Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004098.1 Length=2571 Score E Sequences producing significant alignments: (Bits) Value seq148611 78.8 2e-11 seq61915 78.8 2e-11 seq36758 78.8 2e-11 >seq148611 Length=1737 Score = 78.8 bits (86), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 2481 TGTATTGGTGACTGGTGTACAATATATACTAGAGGGTCTTATAGAACTTATT-ATCCTCT 2539 || ||||| |||||| |||| |||||||||||| | |||| |||||| |||| | Sbjct 1392 TGAATTGGAGACTGGAGTACCATATATACTAGAACCCTTAATAG-CCTTATTGATCCAGT 1450 Query 2540 TCATACACGTGTAGGCCATCCGTTATAATATT 2571 ||||||||||| | ||||||||||||||||| Sbjct 1451 TCATACACGTGGCGTCCATCCGTTATAATATT 1482 >seq61915 Length=2745 Score = 78.8 bits (86), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 2425 TGGCATTCGTGTAAATAAGAAGGTG-TCACCAAATGAGCGCTC---TCACCTCTCTCTAT 2480 |||||| ||||| |||||| | | || || ||| || |||| ||| || | | Sbjct 1824 TGGCATAATTGTAA-TAAGAATGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 1766 Query 2481 TGTATTGGTGACTGGTGTACAATATATACTAGAGGGTCTTATAGAACTTATT-ATCCTCT 2539 || ||||| ||||| ||||||||||||||||| | |||| |||||| |||| | Sbjct 1765 TGAATTGGAGACTGTAGTACAATATATACTAGAACCCTTAATAGC-CTTATTGATCCAGT 1707 Query 2540 TCATACACGTGTAGGCCATCCGTTATAATATT 2571 ||| ||||||| | ||||||||||||||||| Sbjct 1706 TCACACACGTGGCGTCCATCCGTTATAATATT 1675 >seq36758 Length=1493 Score = 78.8 bits (86), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 2425 TGGCATTCGTGTAAATAAGAAGGTG-TCACCAAATGAGCGCTC---TCACCTCTCTCTAT 2480 |||||| ||||| ||||| | | || || ||| || |||| |||||| | | Sbjct 468 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCACCTTGGTGAAA 410 Query 2481 TGTATTGGTGACTGGTGTACAATATATACTAGAGGGTCTTATAGAACTTATT-ATCCTCT 2539 || ||||| |||||| |||| |||||||||||| | |||| |||||| |||| | Sbjct 409 TGAATTGGAGACTGGAGTACCATATATACTAGAACCCTTAATAGC-CTTATTGATCCAGT 351 Query 2540 TCATACACGTGTAGGCCATCCGTTATAATATT 2571 ||| ||||||| | ||||||||||||||||| Sbjct 350 TCACACACGTGGCGTCCATCCGTTATAATATT 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8103887350274