Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004100.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq80055 82.4 1e-12 seq165670 80.6 4e-12 seq154209 80.6 4e-12 seq141764 80.6 4e-12 seq137835 80.6 4e-12 seq126905 80.6 4e-12 seq112980 80.6 4e-12 seq99922 80.6 4e-12 seq60660 80.6 4e-12 seq9812 80.6 4e-12 seq22131 78.8 2e-11 >seq80055 Length=9526 Score = 82.4 bits (90), Expect = 1e-12 Identities = 99/128 (77%), Gaps = 10/128 (8%) Strand=Plus/Plus Query 2482 CCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGTAAAGGGGTACTATATA 2540 ||||||| ||||||| || |||||| | | | |||||| | | || |||| ||||| Sbjct 1222 CCGAATT--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG-ACTGGAGTACCATATA 1278 Query 2541 TACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACACGTGGCGGCCATCCGAA 2597 |||||||||||| ||||| ||| ||| || |||| ||||||||||| ||||||| Sbjct 1279 TACTAGAACCCTTAATAG---CCTTATTGATCCGGTTCACACACGTGGCGTCCATCCGTT 1335 Query 2598 ATAATATT 2605 |||||||| Sbjct 1336 ATAATATT 1343 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 7537 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 7593 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 7594 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 7650 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 7651 GTGGCGTCCATCCGTTATAATATT 7674 >seq165670 Length=8990 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 1625 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGA-T 1681 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 1682 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1738 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1739 GTGGCGTCCATCCGTTATAATATT 1762 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 4694 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 4750 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 4751 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 4807 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 4808 GTGGCGTCCATCCGTTATAATATT 4831 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 6167 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 6223 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 6224 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCAAGTTCACACAC 6280 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 6281 GTGGCGTCCATCCGTTATAATATT 6304 >seq154209 Length=1095 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 954 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 898 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 897 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 841 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 840 GTGGCGTCCATCCGTTATAATATT 817 >seq141764 Length=7460 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 4980 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 4924 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 4923 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 4867 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 4866 GTGGCGTCCATCCGTTATAATATT 4843 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 6447 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 6391 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 6390 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 6334 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 6333 GTGGCGTCCATCCGTTATAATATT 6310 >seq137835 Length=1817 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 492 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 436 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 435 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 379 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 378 GTGGCGTCCATCCGTTATAATATT 355 >seq126905 Length=1800 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 286 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 230 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 229 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 173 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 172 GTGGCGTCCATCCGTTATAATATT 149 >seq112980 Length=47123 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 432 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 488 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 489 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 545 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 546 GTGGCGTCCATCCGTTATAATATT 569 >seq99922 Length=7094 Score = 80.6 bits (88), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | ||||||| ||||||| || |||||| | | | |||||| | Sbjct 2502 AATAAGAGTGAGGTCTCCGAATT--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 2558 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCAT---TCTCGTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| || || |||| ||||| Sbjct 2559 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 2615 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||| | |||||||| Sbjct 2616 GTGGCGTCCATCGGTTATAATATT 2639 >seq60660 Length=52893 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 2305 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 2361 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 2362 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 2418 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 2419 GTGGCGTCCATCCGTTATAATATT 2442 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 6804 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTTAAATGAATTGGAGA 6861 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 ||| | ||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 6862 CAAGAG-TACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 6917 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 6918 GTGGCGTCCATCCGTTATAATATT 6941 >seq9812 Length=5059 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 692 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 636 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 635 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 579 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 578 GTGGCGTCCATCCGTTATAATATT 555 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 3450 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 3394 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 3393 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 3337 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 3336 GTGGCGTCCATCCGTTATAATATT 3313 >seq22131 Length=2017 Score = 78.8 bits (86), Expect = 2e-11 Identities = 92/119 (77%), Gaps = 8/119 (7%) Strand=Plus/Plus Query 2491 AGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGTAAAGGGGTACTATATATACTAGAAC 2549 ||||||| || |||||| | | | |||||| | | || |||| |||||||||||||| Sbjct 1711 AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG-ACTGGAGTACCATATATACTAGAAC 1769 Query 2550 CCTCAATAGAACCCTCATTC-TC--GTTCGCACACGTGGCGGCCATCCGAAATAATATT 2605 ||| ||||| ||| ||| || |||| ||||||||||| ||||||| |||||||| Sbjct 1770 CCTTAATAG---CCTTATTGATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8212492856742