Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_008780.1 Length=2586 Score E Sequences producing significant alignments: (Bits) Value seq165670 77.0 5e-11 >seq165670 Length=8990 Score = 77.0 bits (84), Expect = 5e-11 Identities = 116/159 (73%), Gaps = 16/159 (10%) Strand=Plus/Plus Query 2441 AACCGATGGCATTTTTGTAATAAGAAGTGTGTACCCCGGAT--GAGCT--CTCAAACTTC 2496 || ||||||||| ||||||||||| |||| | | ||| || ||||| || ||||| Sbjct 1607 AAACGATGGCATATTTGTAATAAG-AGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTT- 1664 Query 2497 TGTGTTATGAATTGGGGTAATGGGTTACAATATATACTATAACCCTCA-----TTTACGG 2551 ||| ||||||| || || ||| ||| |||||||||| |||||| | ||| | Sbjct 1665 GGTGAAATGAATT-GGATACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTG 1723 Query 2552 AT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2586 || || |||||||||| ||||||| ||||||||| Sbjct 1724 ATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8151801544304