Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_010648.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq165670 82.4 1e-12 seq112980 80.6 4e-12 seq154209 78.8 2e-11 seq141764 78.8 2e-11 seq137835 78.8 2e-11 seq126905 78.8 2e-11 seq80055 78.8 2e-11 seq60660 78.8 2e-11 seq9812 78.8 2e-11 >seq165670 Length=8990 Score = 82.4 bits (90), Expect = 1e-12 Identities = 117/156 (75%), Gaps = 9/156 (6%) Strand=Plus/Plus Query 2443 GATGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC- 2500 |||||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 1611 GATGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGA 1669 Query 2501 --TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCG 2557 || ||||||| || |||||| | || |||||||||||||| ||| | | | | | Sbjct 1670 AATG-AATTGGA-TACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCC 1727 Query 2558 AGATTCACACACGTGGCGGCCATCCGATATAATATT 2593 || ||||||||||||||| ||||||| ||||||||| Sbjct 1728 AG-TTCACACACGTGGCGTCCATCCGTTATAATATT 1762 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 4682 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 4740 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 4741 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 4798 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 4799 -TTCACACACGTGGCGTCCATCCGTTATAATATT 4831 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 6155 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 6213 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 6214 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCAAG 6271 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 6272 -TTCACACACGTGGCGTCCATCCGTTATAATATT 6304 Score = 78.8 bits (86), Expect = 2e-11 Identities = 117/155 (75%), Gaps = 11/155 (7%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAG-GTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC-- 2500 |||||||||||||| ||| || | ||| |||||||| || ||| | |||| | | Sbjct 7629 TGGCATATTTGTAA-TAAGAGTGATGT-CTCCGAATCAGAGCTCCCTTCAACTTGGTGAA 7686 Query 2501 -TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGA 2558 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | | Sbjct 7687 ATG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCA 7744 Query 2559 GATTCACACACGTGGCGGCCATCCGATATAATATT 2593 | ||||||||||||||| | ||||| ||||||||| Sbjct 7745 G-TTCACACACGTGGCGTCAATCCGTTATAATATT 7778 >seq112980 Length=47123 Score = 80.6 bits (88), Expect = 4e-12 Identities = 117/157 (75%), Gaps = 9/157 (6%) Strand=Plus/Plus Query 2442 TGATGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC 2500 || |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 417 TGGTGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTG 475 Query 2501 ---TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGC 2556 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | Sbjct 476 AAATG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATC 533 Query 2557 GAGATTCACACACGTGGCGGCCATCCGATATAATATT 2593 || ||||||||||||||| ||||||| ||||||||| Sbjct 534 CAG-TTCACACACGTGGCGTCCATCCGTTATAATATT 569 >seq154209 Length=1095 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 966 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 908 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 907 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 850 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 849 -TTCACACACGTGGCGTCCATCCGTTATAATATT 817 >seq141764 Length=7460 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 4992 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 4934 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 4933 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 4876 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 4875 -TTCACACACGTGGCGTCCATCCGTTATAATATT 4843 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 6459 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 6401 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 6400 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 6343 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 6342 -TTCACACACGTGGCGTCCATCCGTTATAATATT 6310 >seq137835 Length=1817 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 504 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 446 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 445 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 388 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 387 -TTCACACACGTGGCGTCCATCCGTTATAATATT 355 >seq126905 Length=1800 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 298 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 240 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 239 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 182 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 181 -TTCACACACGTGGCGTCCATCCGTTATAATATT 149 >seq80055 Length=9526 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 7525 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 7583 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 7584 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 7641 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 7642 -TTCACACACGTGGCGTCCATCCGTTATAATATT 7674 >seq60660 Length=52893 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 2293 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 2351 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 2352 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 2409 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 2410 -TTCACACACGTGGCGTCCATCCGTTATAATATT 2442 >seq9812 Length=5059 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 704 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 646 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 645 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 588 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 587 -TTCACACACGTGGCGTCCATCCGTTATAATATT 555 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 3462 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 3404 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 3403 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 3346 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 3345 -TTCACACACGTGGCGTCCATCCGTTATAATATT 3313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8174161501518