Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_015628.1 Length=2553 Score E Sequences producing significant alignments: (Bits) Value seq60660 80.6 4e-12 seq61915 78.8 1e-11 seq99922 77.0 5e-11 >seq60660 Length=52893 Score = 80.6 bits (88), Expect = 4e-12 Identities = 88/113 (78%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 2443 GCTCTCTCAAACTTGCTCAT-TCAATCGGTGA-AAGAGTGACAATATATACTAGAACCCT 2500 |||| || |||||| | | | ||| || || |||||| || ||||||||||||||||| Sbjct 6830 GCTCCCTTCAACTTGGTTAAATGAATTGGAGACAAGAGT-ACCATATATACTAGAACCCT 6888 Query 2501 CAATAGAACTTTCAATCGTGTTCGCACACGTGGCGGCCATCCGCTATAATATT 2553 ||||| | | ||| |||| ||||||||||| ||||||| ||||||||| Sbjct 6889 TAATAGCCTTATTGATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 6941 Score = 77.0 bits (84), Expect = 5e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 2475 AGAGTGACAATATATACTAGAACCCTCAATAGAACTTTCAATCGTGTTCGCACACGTGGC 2534 ||||| || ||||||||||||||||| ||||| | | ||| |||| |||||||||| Sbjct 5105 AGAGT-ACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAGTTCACACACGTGGC 5163 Query 2535 GGCCATCCGCTATAATATT 2553 | ||||||| ||||||||| Sbjct 5164 GTCCATCCGTTATAATATT 5182 >seq61915 Length=2745 Score = 78.8 bits (86), Expect = 1e-11 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2481 ACAATATATACTAGAACCCTCAATAGAACTTTCAATCGTGTTCGCACACGTGGCGGCCAT 2540 |||||||||||||||||||| ||||| | | ||| |||| ||||||||||| |||| Sbjct 1747 ACAATATATACTAGAACCCTTAATAGCCTTATTGATCCAGTTCACACACGTGGCGTCCAT 1688 Query 2541 CCGCTATAATATT 2553 ||| ||||||||| Sbjct 1687 CCGTTATAATATT 1675 >seq99922 Length=7094 Score = 77.0 bits (84), Expect = 5e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 2475 AGAGTGACAATATATACTAGAACCCTCAATAGAACTTTCAATCGTGTTCGCACACGTGGC 2534 ||||| || ||||||||||||||||| ||||| || | ||| |||| |||||||||| Sbjct 6579 AGAGT-ACCATATATACTAGAACCCTTAATAGCCCTATTGATCCAGTTCACACACGTGGC 6637 Query 2535 GGCCATCCGCTATAATATT 2553 | ||||| | ||||||||| Sbjct 6638 GTCCATCTGTTATAATATT 6656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8046390317438