Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_015961.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq112980 77.0 5e-11 >seq112980 Length=47123 Score = 77.0 bits (84), Expect = 5e-11 Identities = 117/157 (75%), Gaps = 15/157 (10%) Strand=Plus/Plus Query 2461 ATGGTGGCATTTTTGTAATAAGAGGGGTGTACACCGATT--GAGCTCCTCTCAAACTTGC 2518 |||||||||| ||||||||||||| | || | |||| | ||||||| || |||||| Sbjct 416 ATGGTGGCATATTTGTAATAAGAGTGAGGT-CTCCGAATCAGAGCTCC-CTTCAACTTGG 473 Query 2519 TG-ATTGTATTGGTGTATTGGGGTAACTTATATACTAGAA-GGTTCAT----TAACGGAT 2572 || | || ||||| | | ||| ||| | |||||||||||| || || | | ||| Sbjct 474 TGAAATGAATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGAT 532 Query 2573 C---TTC-GACACGTGGCGGCCATCCGCTATAATATT 2605 | ||| |||||||||| ||||||| ||||||||| Sbjct 533 CCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8212492856742