Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq8418 455 1e-124 seq9897 387 4e-104 seq12394 324 4e-85 >seq8418 Length=541 Score = 455 bits (504), Expect = 1e-124 Identities = 417/541 (77%), Gaps = 52/541 (10%) Strand=Plus/Plus Query 2434 GCCTACGACCGGCAGCTCGACAGCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 2493 |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2494 GCGGAGTTTCAGGAGCGCCTTAAAGAAGATACGTCTTTTGGGGGCAACCTCGGACGAGCA 2553 || ||||| |||||||| || |||||||||||||||||||||||||||||||| |||||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2554 GTCTTCCAGGCGAAAAAGAGGGTTCTTGAACCTCTGGGCCTGGTTGAGGAACCTGTTAAG 2613 ||||||||||| ||||||||| ||||||||||||| || |||||||||||| | | |||| Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2614 ACGGCTCCGGGAAAAAAGAGGCCGGTAGAGCACTCT------------------------ 2649 |||||||| ||||| |||||||| |||||||| ||| Sbjct 181 ACGGCTCCTGGAAAGAAGAGGCCTGTAGAGCAGTCTCCTCAGGAACNNNNNNNNNNNNNN 240 Query 2650 -------------CCTGT---------------GGAGCCAGACTCCTCCTCGGGAACCGG 2681 ||||| ||| || ||||||||| |||| | || Sbjct 241 NNNNNNNNNNNGGCCTGTAGAGCAGTCTCCTCAGGAACCGGACTCCTCCGCGGGTATTGG 300 Query 2682 AAAGGCGGGCCAGCAGCCTGCAAGAAAAAGATTGAATTTTGGTCAGACTGGAGACGCAGA 2741 || |||| ||||| || | ||| ||| | ||||| ||||||||||| ||| |||| Sbjct 301 CAAATCGGGTGCACAGCCCGCTAAAAAGAGACTCAATTTCGGTCAGACTGGCGACACAGA 360 Query 2742 CTCAGTACCTGACCCCCAGCCTCTCGGACAGCCACCAGCAGCCCCCTCTGGTCTGGGAAC 2801 ||||| || ||||| || || ||||| | || || ||||||||||| ||| ||||| | Sbjct 361 GTCAGTCCCAGACCCTCAACCAATCGGAGAACCTCCCGCAGCCCCCTCAGGTGTGGGATC 420 Query 2802 TAATACGATGGCTACAGGCAGTGGCGCACCAATGGCAGACAATAACGAGGGCGCCGACGG 2861 | ||| |||||| |||| ||||||||||| |||||||||||||||| || ||||| || Sbjct 421 TCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGG 480 Query 2862 AGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTCAT 2921 |||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct 481 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 Query 2922 C 2922 | Sbjct 541 C 541 >seq9897 Length=937 Score = 387 bits (428), Expect = 4e-104 Identities = 640/915 (70%), Gaps = 27/915 (3%) Strand=Plus/Minus Query 3289 CCGCCGTTCCCAGCAGACGTCTTCATGGTGCCACAGTATGGATACCTCACCCTGAACAAC 3348 |||||||||||||| ||||| |||||| | || ||||| || || || || || || | Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTGACGCTTAATGAT 878 Query 3349 GGGAGTCAGGCAGTAGGACGCTCTTCATTTTACTGCCTGGAGTACTTTCCTTCTCAGATG 3408 || || ||||| || || || || || |||||||||||||| || || || || || ||| Sbjct 877 GGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAATG 818 Query 3409 CTGCGTACCGGAAACAACTTTACCTTCAGCTACACTTTTGAGGACGTTCCTTTCCACAGC 3468 || | || || |||||||| ||||||||| |||||| |||| |||||||| ||| Sbjct 817 CTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAGC 758 Query 3469 AGCTACGCTCACAGCCAGAGTCTGGACCGTCTCATGAATCCTCTCATCGACCAGTACCTG 3528 ||||||||||||||||| || |||||||| || |||||||| ||||||||||| ||| || Sbjct 757 AGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATACTTG 698 Query 3529 TATTA---CTTGAGCAGAACAAACACTCCAAG-TGGAACCACCACGCAGTCAAGGCTTCA 3584 || || || | | | ||| | | | ||| || || | | || |||| Sbjct 697 TACTATCTCTCAAAGACTATTAACGGTTCTGGACAGAATCAACAAACGCTAAA--ATTCA 640 Query 3585 GTTTTCTCAGGCCGGAGCGAGTGACATTCGGGACCAGTCTAGGAACTGGCTTCCTGGACC 3644 || | ||||||| | || |||| | |||| || |||| | |||||||| Sbjct 639 GTGT-----GGCCGGACCCAGCAACATGGCTGTCCAGGGAAGAAACTACATACCTGGACC 585 Query 3645 CTGTTACCGCCAGCAGCGAGTATCAAAGACATCTG-CGGATAACAACAACAGTGAATACT 3703 | | ||||| || || || || |||| || | || | | ||||||||||| |||| Sbjct 584 CAGCTACCGACAACAACGTGTCTCAACCAC-TGTGACTCAAAACAACAACAGCGAATTTG 526 Query 3704 CGTGGACTGGAGCTACCAAGTACCACCTCAATGGCAGAGACTCTCTGGTGAATCCGGGCC 3763 | ||| |||||||| | | |||||||| | | || ||||||| || | Sbjct 525 CTTGGCCTGGAGCTTCTTCTTGGGCTCTCAATGGACGTAATAGCTTGATGAATCCTGGAC 466 Query 3764 CGGCCATGGCAAGCCACAAGGACGATGAAGAAAAGTTTTTTCCTCAGAGCGGGGTTCTCA 3823 | || ||||| |||||||| || | || || || |||||| | || | | | Sbjct 465 CTGCTATGGCCAGCCACAAAGAAGGAGAGGACCGTTTCTTTCCTTTGTCTGGATCTTTAA 406 Query 3824 TCTTTGGGAAGCAAGGCTCAGAGAAAACA-AATGTGGACATTGAAAAGGTCATGATTACA 3882 | ||||| || ||||| | | ||| | | || ||||| || || |||||||| || Sbjct 405 TTTTTGGCAAACAAGGAACTG-GAAGAGACAACGTGGATGCGGACAAAGTCATGATAACC 347 Query 3883 GACGAAGAGGAAATCAGGACAACCAATCCCGTGGCTACGGAGCAGTATGG---------- 3932 ||||||| ||||| | || || || || || || |||||| ||||| Sbjct 346 AACGAAGAAGAAATTAAAACTACTAACCCGGTAGCAACGGAGTCCTATGGACAAGTGGCC 287 Query 3933 TTCTGTATCTACCAACCTCCAGAGAGGCAACAGACAAGCAGCTACC-GCAGATGTCAACA 3991 || | || |||| |||||| | | | ||| || ||| || | |||| | Sbjct 286 ACNAGTGGCCACAAACCACCAGAGTGCCCAAGCACAGGCGCAGACCGGCTGGGTTCAAAA 227 Query 3992 CACAAGGCGTTCTTCCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGGCCCA 4051 | ||||| | ||||| || ||||| ||||||||||||||||||||||| || || |||| Sbjct 226 C-CAAGGAATACTTCCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCA 168 Query 4052 TCTGGGCAAAGATTCCACACACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGAT 4111 | ||||| || ||||| ||||||||||| | |||||||| ||||| || ||||| || | Sbjct 167 TTTGGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGT 108 Query 4112 TCGGACTTAAACACCCTCCTCCACAGATTCTCATCAAGAACACCCCGGTACCTGCGAATC 4171 | ||| | || ||||| ||||| ||||| |||||||| ||||| || ||||||||| ||| Sbjct 107 TTGGAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATC 48 Query 4172 CTTCGACCACCTTCA 4186 || | || |||||| Sbjct 47 CTCCAACGGCCTTCA 33 >seq12394 Length=322 Score = 324 bits (358), Expect = 4e-85 Identities = 224/254 (88%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 4213 ACACAGTACTCCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAAC 4272 || ||||| || || || || ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCCAGTATTCTACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAAC 60 Query 4273 AGCAAACGCTGGAATCCCGAAATTCAGTACACTTCCAACTACAACAAGTCTGTTAATGTG 4332 ||||| |||||||| || || || ||||||||||||||||| |||||||| |||||| Sbjct 61 AGCAAGCGCTGGAACCCGGAGATCCAGTACACTTCCAACTATTACAAGTCTAATAATGTT 120 Query 4333 GACTTTACTGTGGACACTAATGGCGTGTATTCAGAGCCTCGCCCCATTGGCACCAGATAC 4392 || ||| |||| | ||| | || || ||| || || ||||||||||||||||||||| Sbjct 121 GAATTTGCTGTTAATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATAC 180 Query 4393 CTGACTCGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAA 4452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTGACTCGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAA 240 Query 4453 CTTTGGTCTCTGCG 4466 |||||||||||||| Sbjct 241 CTTTGGTCTCTGCG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14834867068080