Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq9897 105 2e-19 seq8418 104 8e-19 >seq9897 Length=937 Score = 105 bits (116), Expect = 2e-19 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 4233 CCAGGAATGGTTTGGCAGAACAGGGATATATATCTGCAGGGACCTATTGGGGCAAAAATA 4292 || || |||||||||||| |||| ||| | || ||||| ||||| ||| |||| ||||| Sbjct 213 CCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCATTTGGGCCAAAATT 154 Query 4293 CCGAAGACTGATGGTAAATTCCATCCTTCTCCGAATCTCGGAGGATTTGGCCTGCACAAT 4352 || | || || || || || || ||||||||| | ||||| ||||| || | | Sbjct 153 CCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTTGGAATGAAGCAC 94 Query 4353 CCACCACCGCAGGTGTTCATCAAGAATACACCAGTGCCTGCAGACCCTCCA 4403 || || || ||| | ||||||| || ||||| || ||||| || |||||| Sbjct 93 CCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATCCTCCA 43 >seq8418 Length=541 Score = 104 bits (114), Expect = 8e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 3075 GGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGA 3134 ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| Sbjct 470 GGTGCCGATGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGG 529 Query 3135 AACACAGTCATC 3146 ||| ||||||| Sbjct 530 GACAGAGTCATC 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16198882623220