Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq8418 572 5e-160 seq9897 376 7e-101 seq12394 255 2e-64 >seq8418 Length=541 Score = 572 bits (634), Expect = 5e-160 Identities = 443/541 (82%), Gaps = 52/541 (10%) Strand=Plus/Plus Query 2440 GCTTACGACCAGCAGCTCAAGGCCGGTGACAACCCGTACCTCAAGTACAACCACGCCGAC 2499 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2500 GCCGAGTTTCAGGAGCGTCTTCAAGAAGATACGTCTTTTGGGGGCAACCTTGGCAGAGCA 2559 |||||||| |||||||| || |||||||||||||||||||||||||||| || ||||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2560 GTCTTCCAGGCCAAAAAGAGGATCCTTGAGCCTCTTGGTCTGGTTGAGGAAGCAGCTAAA 2619 ||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||| Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2620 ACGGCTCCTGGAAAGAA------------------------GG----------------- 2638 ||||||||||||||||| || Sbjct 181 ACGGCTCCTGGAAAGAAGAGGCCTGTAGAGCAGTCTCCTCAGGAACNNNNNNNNNNNNNN 240 Query 2639 -----------GGGCTGTAGATCAGTCTCCTCAGGAACCGGACTCATCATCTGGTGTTGG 2687 || ||||||| ||||||||||||||||||||||| || | ||| |||| Sbjct 241 NNNNNNNNNNNGGCCTGTAGAGCAGTCTCCTCAGGAACCGGACTCCTCCGCGGGTATTGG 300 Query 2688 CAAATCGGGCAAACAGCCTGCCAGAAAAAGACTAAATTTCGGTCAGACTGGAGACTCAGA 2747 ||||||||| |||||| || | ||| ||||| ||||||||||||||||| ||| |||| Sbjct 301 CAAATCGGGTGCACAGCCCGCTAAAAAGAGACTCAATTTCGGTCAGACTGGCGACACAGA 360 Query 2748 GTCAGTCCCAGACCCTCAACCTCTCGGAGAACCACCAGCAGCCCCCACAAGTTTGGGATC 2807 ||||||||||||||||||||| |||||||||| || ||||||||| || || ||||||| Sbjct 361 GTCAGTCCCAGACCCTCAACCAATCGGAGAACCTCCCGCAGCCCCCTCAGGTGTGGGATC 420 Query 2808 TAATACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATAACGAGGGTGCCGATGG 2867 | ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| Sbjct 421 TCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGG 480 Query 2868 AGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCAT 2927 |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 481 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 Query 2928 C 2928 | Sbjct 541 C 541 >seq9897 Length=937 Score = 376 bits (416), Expect = 7e-101 Identities = 667/954 (70%), Gaps = 38/954 (4%) Strand=Plus/Minus Query 3295 CCGCCGTTTCCAGCGGACGTCTTCATGGTCCCTCAGTATGGATACCTCACCCTGAACAAC 3354 |||||||| ||||||||||| |||||| | |||||||| || || || || || || | Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTGACGCTTAATGAT 878 Query 3355 GGAAGTCAAGCGGTGGGACGCTCATCCTTTTACTGCCTGGAGTACTTCCCTTCGCAGATG 3414 ||||| || || ||||| || || ||||||||||||||||| || ||||| ||||| ||| Sbjct 877 GGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAATG 818 Query 3415 CTAAGGACTGGAAATAACTTCCAATTCAGCTATACCTTCGAGGATGTACCTTTTCACAGC 3474 ||||| || || || |||||||| |||||||| || ||| | |||||||| || ||| Sbjct 817 CTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAGC 758 Query 3475 AGCTACGCTCACAGCCAGAGTTTGGATCGCTTGATGAATCCTCTTATTGATCAGTATCTG 3534 ||||||||||||||||| || |||| || | |||||||| || || || || || || Sbjct 757 AGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATACTTG 698 Query 3535 TACTACCTGAACAGAACGCAAGGAACAACCTCTGGA-ACAACCAACCAATCACGGCTGCT 3593 ||||| || || || | | ||| |||||| | || |||| || ||| Sbjct 697 TACTATCT-CTCA-AAGACTATTAAC-GGTTCTGGACAGAATCAACAAA----CGCTAAA 645 Query 3594 TTTTAGCCAGGCTGGGCCTCAG-TCTATGTCTTTGCAGGCCAGAAATTGGCTACCTGGGC 3652 || || ||| || || ||| ||| || | |||| ||||| | ||||||| | Sbjct 644 ATTCAGTGTGGCCGGACC-CAGCAACATGGCTGTCCAGGGAAGAAACTACATACCTGGAC 586 Query 3653 CCTGCTACCGGCAACAGAGACTTTCAAAGACTGCTAACGACAACAACAACAGTAACTTTC 3712 || ||||||| ||||| | | |||| |||| | | ||||||||||| | ||| Sbjct 585 CCAGCTACCGACAACAACGTGTCTCAACCACTGTGACTCAAAACAACAACAGCGAATTTG 526 Query 3713 CTTGGACAGCGGCCAGCAAATATCATCTCAATGGCCGCGACTCGC-TGGTGAATCCAGGA 3771 ||||| | | || | ||||||||| || | | || || ||||||| ||| Sbjct 525 CTTGGCCTGGAGCTTCTTCTTGGGCTCTCAATGGACG-TAATAGCTTGATGAATCCTGGA 467 Query 3772 CCAGCTATGGCCAGTCACAAGGACGATGAAGAAAAATTTTTCCCTATGCACGGCAATCTA 3831 || ||||||||||| ||||| || | || || || || ||| || || | || Sbjct 466 CCTGCTATGGCCAGCCACAAAGAAGGAGAGGACCGTTTCTTTCCTTTGTCTGGATCTTTA 407 Query 3832 ATATTTGGCAAAGAAGGGACAACGGCAAG---TAACGCAGAATTAGATAATGTAATGATT 3888 || ||||||||| |||| ||| | ||| |||| || || || || ||||| Sbjct 406 ATTTTTGGCAAACAAGG---AACTGGAAGAGACAACGTGGATGCGGACAAAGTCATGATA 350 Query 3889 ACGGATGAAGAAGAGATTCGTACCACCAATCCTGTGGCAACAGAGCAGTATGGA------ 3942 || | |||||||| ||| || || || || || ||||| ||| |||||| Sbjct 349 ACCAACGAAGAAGAAATTAAAACTACTAACCCGGTAGCAACGGAGTCCTATGGACAAGTG 290 Query 3943 ---ACT-GTGGCAAATAACTTGCAGA--GCTCAAATACAGCTCCCACGACTGGAACTG-- 3994 || ||||| | ||| |||| || ||| |||| | || ||| || ||| Sbjct 289 GCCACNAGTGGCCACAAACCACCAGAGTGCCCAAGCACAG-GCGCA-GACCGG--CTGGG 234 Query 3995 -TCAATCATCAGGGGGCCTTACCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAA 4053 |||| | || || | || || ||||| ||||| || | || |||||||| ||| Sbjct 233 TTCAA-AACCAAGGAATACTTCCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAA 175 Query 4054 GGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATG 4113 ||||| || ||||| || |||||||||||||| || ||||||| |||||||| |||||| Sbjct 174 GGACCCATTTGGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATG 115 Query 4114 GGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATACTCCGGTACCG 4173 ||||| |||||| |||| || ||||||||||| ||| | |||||||| || || ||||| Sbjct 114 GGAGGGTTTGGAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCT 55 Query 4174 GCAAATCCTCCGACGACTTTCAGCCCGGCCAAGTTTGCTTCATTTATCACTCAG 4227 || ||||||| ||| | |||| | || |||| | || || ||||| ||| Sbjct 54 GCGGATCCTCCAACGGCCTTCAACAAGGACAAGCTGAACTCTTTCATCACCCAG 1 >seq12394 Length=322 Score = 255 bits (282), Expect = 2e-64 Identities = 208/251 (83%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 4222 ACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGAAAAC 4281 || ||||| || ||||| || ||||||||||| || ||||||||||| ||||| |||||| Sbjct 1 ACCCAGTATTCTACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAAC 60 Query 4282 AGCAAACGTTGGAATCCAGAGATTCAGTACACTTCCAACTACAACAAGTCTGTTAATGTG 4341 ||||| || ||||| || ||||| ||||||||||||||||| |||||||| |||||| Sbjct 61 AGCAAGCGCTGGAACCCGGAGATCCAGTACACTTCCAACTATTACAAGTCTAATAATGTT 120 Query 4342 GACTTTACTGTAGACACTAATGGTGTTTATAGTGAACCTCGCCCTATTGGAACCCGGTAT 4401 || ||| |||| | ||| | ||||| ||||||||||| ||||| ||||| ||| | || Sbjct 121 GAATTTGCTGTTAATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATAC 180 Query 4402 CTCACACGAAACTTGTGAATCCTGGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAA 4461 || || || || ||| | | || |||||||||||||||||||||||||||||||||||| Sbjct 181 CTGACTCGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAA 240 Query 4462 CTTTGG-CTCT 4471 |||||| |||| Sbjct 241 CTTTGGTCTCT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985004611620