Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq8418 280 4e-72 seq9897 165 2e-37 seq12394 100 9e-18 >seq8418 Length=541 Score = 280 bits (310), Expect = 4e-72 Identities = 184/203 (91%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 2488 GCCTACGACCAGCAGCTCAAGGCCGGTGACAACCCCTACCTCAAGTACAACCACGCCGAC 2547 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2548 GCGGAGTTCCAGCAGCGGCTTCAGGGCGACACATCGTTTGGGGGCAACCTCGGCAGAGCA 2607 || ||||||||| ||||||| | | || || || ||||||||||||||||| ||||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2608 GTCTTCCAGGCCAAAAAGAGGGTTCTTGAACCTCTTGGTCTGGTTGAGCAAGCGGGTGAG 2667 ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | || Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2668 ACGGCTCCTGGAAAGAAGAGACC 2690 |||||||||||||||||||| || Sbjct 181 ACGGCTCCTGGAAAGAAGAGGCC 203 >seq9897 Length=937 Score = 165 bits (182), Expect = 2e-37 Identities = 145/181 (80%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 4060 CCTGGAATGGTCTGGCAAAACAGAGACATTTACTACCAGGGTCCCATTTGGGCCAAGATT 4119 || || ||||| ||||| ||||||| | ||| || || |||||||||||||| ||| Sbjct 213 CCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCATTTGGGCCAAAATT 154 Query 4120 CCTCATACCGATGGACACTTTCACCCCTCACCGCTGATTGGTGGGTTTGGGCTGAAACAC 4179 ||||| || || || |||||||||| || |||||||| || |||||||| |||| ||| Sbjct 153 CCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTTGGAATGAAGCAC 94 Query 4180 CCGCCTCCTCAAATTTTTATCAAGAACACCCCGGTACCTGCGAATCCTGCAACGACCTTC 4239 ||||||||||| || | ||||| ||||| || ||||||||| ||||| ||||| ||||| Sbjct 93 CCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATCCTCCAACGGCCTTC 34 Query 4240 A 4240 | Sbjct 33 A 33 Score = 114 bits (126), Expect = 4e-22 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 3413 CCTTCTACTGCCTGGAGTACTTTCCTTCGCAGATGCTGCGGACTGGCAACAACTTTGAAA 3472 |||| ||||||||||| || || || ||||| ||||| | || || |||||||| | Sbjct 852 CCTTTTACTGCCTGGAATATTTCCCGTCGCAAATGCTAAGAACGGGTAACAACTTCCAGT 793 Query 3473 TTACGTACAGTTTTGAGAAGGTGCCTTTCCACTCGATGTACGCGCACAGCCAGAGCCTGG 3532 | | ||| |||||||| || |||||||| | ||||| |||||||| ||||||| Sbjct 792 TCAGCTACGAGTTTGAGAACGTACCTTTCCATAGCAGCTACGCTCACAGCCAAAGCCTGG 733 Query 3533 ACCGGCTGATGAACCCTCTCATCGACCAGTACCTGT 3568 |||| || ||||| || ||||||||||| ||| ||| Sbjct 732 ACCGACTAATGAATCCACTCATCGACCAATACTTGT 697 >seq12394 Length=322 Score = 100 bits (110), Expect = 9e-18 Identities = 169/244 (69%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 4279 ACTGGCCAGGTGTCGGTGCAGATTGACTGGGAGATCCAGAAGGAGCGGTCCAAACGCTGG 4338 |||||||| || ||| |||| || |||||| | |||||||| ||| |||||| Sbjct 13 ACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGG 72 Query 4339 AACCCCGAGGTCCAGTTTACCTCCAACTACGGACAGCAAAACTCTC----TGTTG--TGG 4392 ||||| ||| |||||| || |||||||| | || ||| ||||| | Sbjct 73 AACCCGGAGATCCAGTACACTTCCAACTATT------ACAAGTCTAATAATGTTGAATTT 126 Query 4393 GCTCCCGATGCGGCTGGGAAATACACTGAGCCTAGGGCTATCGGTACCCGCTACCTCACC 4452 ||| || | | || ||| | ||| || | | || || ||| | ||||| || Sbjct 127 GCTGTTAATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATACCTGACT 186 Query 4453 CACCACCTGTAATAACCTGTTAATCAATAAACCGGTTTATTCGTTTCAGTTGAACTTTGG 4512 | | ||||||| | ||||||||||||||||| || |||||||||||||||||||||| Sbjct 187 CGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAACTTTGG 246 Query 4513 TCTC 4516 |||| Sbjct 247 TCTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15115975660240