Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq8418 504 2e-139 seq9897 437 3e-119 seq12394 217 4e-53 >seq8418 Length=541 Score = 504 bits (558), Expect = 2e-139 Identities = 428/541 (79%), Gaps = 52/541 (10%) Strand=Plus/Plus Query 2454 GCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGAC 2513 |||||||||||||||||||| || || ||||| |||||||| ||| |||||||||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2514 GCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 2573 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2574 GTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAGGAAGGCGCTAAG 2633 |||||||||||||| ||| || |||| |||||||| |||||||||||||||| |||||| Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2634 ACGGCTCCTGGAAAGA---------------------------AAC-------------- 2652 |||||||||||||||| ||| Sbjct 181 ACGGCTCCTGGAAAGAAGAGGCCTGTAGAGCAGTCTCCTCAGGAACNNNNNNNNNNNNNN 240 Query 2653 -----------GTCCGGTAGAGCAGTCGCCACAAGAGCCAGACTCCTCCTCGGGCATCGG 2701 | || ||||||||||| || || || || ||||||||| |||| || || Sbjct 241 NNNNNNNNNNNGGCCTGTAGAGCAGTCTCCTCAGGAACCGGACTCCTCCGCGGGTATTGG 300 Query 2702 CAAGACAGGCCAGCAGCCCGCTAAAAAGAGACTCAATTTTGGTCAGACTGGCGACTCAGA 2761 ||| | || |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 301 CAAATCGGGTGCACAGCCCGCTAAAAAGAGACTCAATTTCGGTCAGACTGGCGACACAGA 360 Query 2762 GTCAGTCCCCGATCCACAACCTCTCGGAGAACCTCCAGCAACCCCCGCTGCTGTGGGACC 2821 ||||||||| || || ||||| ||||||||||||| ||| ||||| | | ||||||| | Sbjct 361 GTCAGTCCCAGACCCTCAACCAATCGGAGAACCTCCCGCAGCCCCCTCAGGTGTGGGATC 420 Query 2822 TACTACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGG 2881 | ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| || Sbjct 421 TCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGG 480 Query 2882 AGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCAT 2941 |||||||| | |||| ||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 481 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 Query 2942 C 2942 | Sbjct 541 C 541 >seq9897 Length=937 Score = 437 bits (484), Expect = 3e-119 Identities = 643/902 (71%), Gaps = 23/902 (3%) Strand=Plus/Minus Query 3312 CCTCCGTTCCCGGCGGACGTGTTCATGATTCCGCAATACGGCTACCTGACGCTCAACAAT 3371 || |||||||| |||||||| ||||||||||| || ||||| || |||||||| || || Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTGACGCTTAATGAT 878 Query 3372 GGCAGCCAAGCCGTGGGACGTTCATCCTTTTACTGCCTGGAATATTTCCCTTCTCAGATG 3431 || ||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||| Sbjct 877 GGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAATG 818 Query 3432 CTGAGAACGGGCAACAACTTTACCTTCAGCTACACCTTTGAGGAAGTGCCTTTCCACAGC 3491 || |||||||| |||||||| ||||||||| |||||| | || |||||||| ||| Sbjct 817 CTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAGC 758 Query 3492 AGCTACGCGCACAGCCAGAGCCTGGACCGGCTGATGAATCCTCTCATCGACCAATACCTG 3551 |||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||| || Sbjct 757 AGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATACTTG 698 Query 3552 TATTACCTGAACAGAACTCAAAATCAGTCCGGA-AGTGCCCA-AAACAAGGACTTGCTGT 3609 || || || | ||| || || ||| || | | |||| | | | || Sbjct 697 TACTATCTCTCAAAGACTATTAACGGTTCTGGACAGAATCAACAAACGCTAAAATTCAGT 638 Query 3610 TTAGCCGTGGGTCTCCAGCTGGCATGTCTGTTCAGCCCAAAAACTGGCTACCTGGACCCT 3669 | ||| || | ||||| |||| |||| ||| | ||||| ||||||||||| Sbjct 637 GTGGCC---GGAC-CCAGC-AACATGGCTGTCCAGGGAAGAAACTACATACCTGGACCCA 583 Query 3670 GTTATCGGCAGCAGCGCGTTTCTAAAACAAAAACAGACAANNNNNNNNGCAATTTTACCT 3729 | || || || || || || || | || || | || || | ||| | | Sbjct 582 GCTACCGACAACAACGTGTCTCAACCACTGTGACTCAAAACAACAACAGCGAATTTGCTT 523 Query 3730 GGACTGGTGCTTCAAAATATAACCTCAATGGGCGTGAATCCATCATCAACCCTGGCACTG 3789 || |||| ||||| | |||||||| ||| | | | || || ||||| ||| Sbjct 522 GGCCTGGAGCTTCTTCTTGGGCTCTCAATGGACGTAATAGCTTGATGAATCCTGGACCTG 463 Query 3790 CTATGGCCTCACACAAAGACGACGAAGACAAGTTCTTTCCCATGAGCGGTGTCATGATTT 3849 |||||||| |||||||| | || ||| |||||||| || || | |||| Sbjct 462 CTATGGCCAGCCACAAAGAAGGAGAGGACCGTTTCTTTCCTTTGTCTGGATCTTTAATTT 403 Query 3850 TTGGAAAAGAGAGCGCCGGAGCTTCAAACACTGCAT-TGGACAATGTCATGATTACAGAC 3908 |||| ||| | | | ||| ||| || || |||||| |||||||| || || Sbjct 402 TTGGCAAACAAGGAACTGGAAGAGACAAC-GTGGATGCGGACAAAGTCATGATAACCAAC 344 Query 3909 GAAGAGGAAATTAAAGCCACTAACCCTGTGGCCACCGAAAGATTTGG------GACC--- 3959 ||||| ||||||||| | |||||||| || || || || | ||| | || Sbjct 343 GAAGAAGAAATTAAAACTACTAACCCGGTAGCAACGGAGTCCTATGGACAAGTGGCCACN 284 Query 3960 -GTGGCAGTCAATTTCCAGA--GCAGCAGCACAGACCCTGCGACCGGAGATGTGCATGCT 4016 ||||| || ||||| || ||||||| | | |||||| || || Sbjct 283 AGTGGCCACAAACCACCAGAGTGCCCAAGCACAGGCGC--AGACCGGCTGGGTTCAAAAC 226 Query 4017 ATGGGAGCATTACCTGGCATGGTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATT 4076 ||| | | || || ||||| ||||| || ||||| ||||||||||| || |||||| Sbjct 225 CAAGGAATACTTCCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCATT 166 Query 4077 TGGGCCAAAATTCCTCACACAGATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTT 4136 |||||||||||||||||||| || || |||||||||| ||||| || ||||| || ||| Sbjct 165 TGGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTT 106 Query 4137 GGACTCAAGAACCCGCCTCCTCAGATCCTCATCAAAAACACGCCTGTTCCTGCGAATCCT 4196 ||| | ||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 105 GGAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATCCT 46 Query 4197 CC 4198 || Sbjct 45 CC 44 >seq12394 Length=322 Score = 217 bits (240), Expect = 4e-53 Identities = 198/250 (79%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 4236 ACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAGAAAGAAAAC 4295 ||||| || || || || ||||| || ||||| || || |||||||||||||| |||||| Sbjct 1 ACCCAGTATTCTACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAAC 60 Query 4296 AGCAAGCGCTGGAATCCCGAAGTGCAGTACACATCCAATTATGCAAAATCTGCCAACGTT 4355 |||||||||||||| || || | |||||||| ||||| ||| || ||| || ||| Sbjct 61 AGCAAGCGCTGGAACCCGGAGATCCAGTACACTTCCAACTATTACAAGTCTAATAATGTT 120 Query 4356 GATTTTACTGTGGACAACAATGGACTTTATACTGAGCCTCGCCCCATTGGCACCCGTTAC 4415 || ||| |||| | | | || | |||| ||| || ||||||||||||||| | ||| Sbjct 121 GAATTTGCTGTTAATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATAC 180 Query 4416 CTTACCCGTCCCCTGTAATTACGTGTTAATCAATAAACCGGTTGATTCGTTTCAGTTGAA 4475 || || ||| |||||||| | ||||||||||||||||| || |||||||||||||||| Sbjct 181 CTGACTCGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAA 240 Query 4476 CTTTGGTCTC 4485 |||||||||| Sbjct 241 CTTTGGTCTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14959449285060