Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004098.1 Length=2571 Score E Sequences producing significant alignments: (Bits) Value seq118076 87.8 3e-14 seq80753 77.0 5e-11 >seq118076 Length=24012 Score = 87.8 bits (96), Expect = 3e-14 Identities = 114/152 (75%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 2425 TGGCATTCGTGTAAATAAGAAGG-TGTCACCAAATGAGCGCTC---TCACCTCTCTCTAT 2480 |||||| ||||| ||||| | |||| || ||| || |||| ||| || | | Sbjct 10111 TGGCATATTTGTAA-TAAGAGTGATGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 10053 Query 2481 TGTATTGGTGACTGGTGTACAATATATACTAGAGGGTCTTATAGAACTTATT-ATCCTCT 2539 || ||||| |||||| |||| |||||||||||| | |||| |||||| |||| | Sbjct 10052 TGAATTGGAGACTGGAGTACCATATATACTAGAACCCTTAATAGC-CTTATTGATCCAGT 9994 Query 2540 TCATACACGTGTAGGCCATCCGTTATAATATT 2571 ||| ||||||| |||||||||||||||||||| Sbjct 9993 TCACACACGTGGAGGCCATCCGTTATAATATT 9962 Score = 77.0 bits (84), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 5/127 (4%) Strand=Plus/Minus Query 2449 GTCACCAAATGAGCGCTC---TCACCTCTCTCTATTGTATTGGTGACTGGTGTACAATAT 2505 ||| |||||| || |||| ||| || | | || ||||| |||||| |||| |||| Sbjct 6037 GTCTCCAAATCAGAGCTCCCTTCAACTTGATGAAATGAATTGGAGACTGGAGTACCATAT 5978 Query 2506 ATACTAGAGGGTCTTATAGAACTTATT-ATCCTCTTCATACACGTGTAGGCCATCCGTTA 2564 |||||||| | |||| |||||| |||| |||| ||||||| | |||||||||| Sbjct 5977 ATACTAGAACCCTTAATAGC-CTTATTGATCCAATTCACACACGTGGTGTCCATCCGTTA 5919 Query 2565 TAATATT 2571 ||||||| Sbjct 5918 TAATATT 5912 >seq80753 Length=2195 Score = 77.0 bits (84), Expect = 5e-11 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 2481 TGTATTGGTGACTGGTGTACAATATATACTAGAGGGTCTTA-TAGAACTTATT-ATCCTC 2538 || ||||| |||||| |||| |||||||||||| ||||| ||| |||||| |||| Sbjct 576 TGAATTGGAGACTGGAGTACCATATATACTAGAAT-TCTTAATAGC-CTTATTGATCCAG 519 Query 2539 TTCATACACGTGTAGGCCATCCGTTATAATATT 2571 |||| ||||||| | ||||||||||||||||| Sbjct 518 TTCACACACGTGGCGTCCATCCGTTATAATATT 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8104637708616