Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004100.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq154006 80.6 4e-12 seq118076 80.6 4e-12 seq104008 80.6 4e-12 seq100414 80.6 4e-12 seq96245 80.6 4e-12 seq94908 80.6 4e-12 seq87523 80.6 4e-12 seq87044 80.6 4e-12 seq82408 80.6 4e-12 seq80753 80.6 4e-12 >seq154006 Length=59937 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 55250 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 55194 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 55193 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 55137 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 55136 GTGGCGTCCATCCGTTATAATATT 55113 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 56719 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 56663 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 56662 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 56606 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 56605 GTGGCGTCCATCCGTTATAATATT 56582 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 58824 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 58768 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 58767 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 58711 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 58710 GTGGCGTCCATCCGTTATAATATT 58687 >seq118076 Length=24012 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 1670 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 1614 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 1613 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1557 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1556 GTGGCGTCCATCCGTTATAATATT 1533 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 23232 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGA-T 23176 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 23175 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 23119 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 23118 GTGGCGTCCATCCGTTATAATATT 23095 Score = 78.8 bits (86), Expect = 2e-11 Identities = 109/145 (75%), Gaps = 12/145 (8%) Strand=Plus/Minus Query 2466 AATATGAGAG-TGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTG 2523 |||| ||| | ||| | |||||| ||||||| || |||||| | | | |||||| | Sbjct 10099 AATAAGAGTGATGT-CTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG 10043 Query 2524 TAAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCAT---TCTCGTTCGCACA 2580 | || |||| ||||||||||||||||| ||||| ||| || || |||| |||| Sbjct 10042 -ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACA 9987 Query 2581 CGTGGCGGCCATCCGAAATAATATT 2605 ||||| ||||||||| |||||||| Sbjct 9986 CGTGGAGGCCATCCGTTATAATATT 9962 >seq104008 Length=3583 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 1877 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 1821 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 1820 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1764 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1763 GTGGCGTCCATCCGTTATAATATT 1740 >seq100414 Length=7639 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 2521 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 2577 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 2578 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 2634 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 2635 GTGGCGTCCATCCGTTATAATATT 2658 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 6723 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTTAAATGAATTGGAGA 6780 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 ||| | ||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 6781 CAAGAG-TACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 6836 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 6837 GTGGCGTCCATCCGTTATAATATT 6860 >seq96245 Length=3676 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Plus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 1937 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 1993 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 1994 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 2050 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 2051 GTGGCGTCCATCCGTTATAATATT 2074 >seq94908 Length=4717 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 3688 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 3632 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 3631 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 3575 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 3574 GTGGCGTCCATCCGTTATAATATT 3551 >seq87523 Length=1929 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 1582 AATAAGAGTGAGGCCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 1526 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 1525 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1469 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1468 GTGGCGTCCATCCGTTATAATATT 1445 >seq87044 Length=4357 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 2111 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 2055 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 2054 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1998 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1997 GTGGCGTCCATCCGTTATAATATT 1974 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 3398 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 3342 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 3341 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 3285 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 3284 GTGGCGTCCATCCGTTATAATATT 3261 >seq82408 Length=6188 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 712 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 656 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 655 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 599 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 598 GTGGCGTCCATCCGTTATAATATT 575 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 2030 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 1974 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 1973 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1917 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1916 GTGGCGTCCATCCGTTATAATATT 1893 Score = 78.8 bits (86), Expect = 2e-11 Identities = 92/119 (77%), Gaps = 8/119 (7%) Strand=Plus/Minus Query 2491 AGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGTAAAGGGGTACTATATATACTAGAAC 2549 ||||||| || |||||| | | | |||||| | | || |||| |||||||||||||| Sbjct 3383 AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG-ACTGGAGTACCATATATACTAGAAC 3325 Query 2550 CCTCAATAGAACCCTCATTC-TC--GTTCGCACACGTGGCGGCCATCCGAAATAATATT 2605 ||| ||||| ||| ||| || |||| ||||||||||| ||||||| |||||||| Sbjct 3324 CCTAAATAG---CCTTATTGATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 3269 >seq80753 Length=2195 Score = 80.6 bits (88), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 2466 AATATGAGAGTGTACCCCGAATTCGAGAGCTCTCTCAAACTTGCTCTA-TCAATTGGTGT 2524 |||| ||| | | | |||||| ||||||| || |||||| | | | |||||| | Sbjct 2093 AATAAGAGTGAGGTCTCCGAATC--AGAGCTCCCTTCAACTTGGTGAAATGAATTGGAG- 2037 Query 2525 AAAGGGGTACTATATATACTAGAACCCTCAATAGAACCCTCATTC-TC--GTTCGCACAC 2581 | || |||| ||||||||||||||||| ||||| ||| ||| || |||| ||||| Sbjct 2036 ACTGGAGTACCATATATACTAGAACCCTTAATAG---CCTTATTGATCCAGTTCACACAC 1980 Query 2582 GTGGCGGCCATCCGAAATAATATT 2605 |||||| ||||||| |||||||| Sbjct 1979 GTGGCGTCCATCCGTTATAATATT 1956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8213253271128