Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004660.1 Length=2589 Score E Sequences producing significant alignments: (Bits) Value seq118076 82.4 1e-12 seq82408 77.0 5e-11 >seq118076 Length=24012 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/166 (73%), Gaps = 13/166 (8%) Strand=Plus/Minus Query 1 TGGCATTTCTGTAATAAGAAGGGTGTACACCAGTT-GAGCTCTCTCAAACTTGCTGAT-T 58 |||||| | |||||||||| | || | | | |||||| || |||||| ||| | Sbjct 3157 TGGCATATTTGTAATAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAAT 3098 Query 59 CAATTGGTGTATTGGGGTGCAATATATAGTATAACTCTCATTAACG-----GATTC---T 110 |||||| | | ||| || | |||||||||| ||| || |||| | ||| | | Sbjct 3097 GAATTGGAG-ACTGGAGTACCATATATAGTAGAACCCTTATTAGCCTTATTGATCCAGTT 3039 Query 111 CA-ACACGTGGCGGCCATCCGT-ATAATATTACCGGATGGCCGCGC 154 || |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 3038 CACACACGTGGCGTCCATCCGTTATAATATTACCGGATGGACGCGC 2993 Score = 77.0 bits (84), Expect = 5e-11 Identities = 121/166 (73%), Gaps = 13/166 (8%) Strand=Plus/Minus Query 1 TGGCATTTCTGTAATAAGAAGGGTGTACACCAGTT-GAGCTCTCTCAAACTTGCTGAT-T 58 |||||| | |||||||||| | ||| | | | |||||| || |||||| ||| | Sbjct 10111 TGGCATATTTGTAATAAGAGTGATGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAAT 10052 Query 59 CAATTGGTGTATTGGGGTGCAATATATAGTATAACTCTCATTAACG-----GATTC---T 110 |||||| | | ||| || | ||||||| || ||| || | || | ||| | | Sbjct 10051 GAATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAGTT 9993 Query 111 CA-ACACGTGGCGGCCATCCGT-ATAATATTACCGGATGGCCGCGC 154 || |||||||| |||||||||| ||||||||||||||||| ||||| Sbjct 9992 CACACACGTGGAGGCCATCCGTTATAATATTACCGGATGGACGCGC 9947 >seq82408 Length=6188 Score = 77.0 bits (84), Expect = 5e-11 Identities = 122/167 (73%), Gaps = 15/167 (9%) Strand=Plus/Minus Query 1 TGGCATTTCTGTAATAAGAAGGGTGTACACC--AGTTGAGCTCTCTCAAACTTGCTGAT- 57 |||||| | |||||||||| | | | | || || |||||| || |||||| ||| Sbjct 3418 TGGCATATTTGTAATAAGA-GTGAGGCCTCCGAAGCAGAGCTCCCTTCAACTTGGTGAAA 3360 Query 58 TCAATTGGTGTATTGGGGTGCAATATATAGTATAACTCTCATTAACG-----GATTC--- 109 | |||||| | | ||| || | ||||||| || ||| || | || | ||| | Sbjct 3359 TGAATTGGAG-ACTGGAGTACCATATATACTAGAACCCTAAATAGCCTTATTGATCCAGT 3301 Query 110 TCA-ACACGTGGCGGCCATCCGT-ATAATATTACCGGATGGCCGCGC 154 ||| |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 3300 TCACACACGTGGCGTCCATCCGTTATAATATTACCGGATGGACGCGC 3254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8162140065240