Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq8418 138 3e-29 seq9897 134 4e-28 >seq8418 Length=541 Score = 138 bits (152), Expect = 3e-29 Identities = 146/189 (77%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 2508 GCTTACGACCTCGAAATCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGAC 2567 || ||||||| | |||||| ||| ||||||||||| | |||||||| | |||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2568 AGACG-TTTCCAGGAACGTCTCAAAGACGATACCTCCTTTGGAGGCAATTTAGGTAAAGC 2626 | || |||||||| || |||||||| ||||| || ||||| ||||| | || ||| Sbjct 61 -GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGC 119 Query 2627 CATCTTCCAGGCCAAAAAGAGGGTTCTCGAACCCTTTGGTCTGGT---GGAAGACTCAAA 2683 |||||||||||||||||||| |||| ||||| |||||||||| ||||| | || Sbjct 120 AGTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAA 179 Query 2684 GACGGCTCC 2692 ||||||||| Sbjct 180 GACGGCTCC 188 Score = 116 bits (128), Expect = 1e-22 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 2844 GCACCCGCCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGC 2903 ||| || |||| |||||||||| || |||||| ||| ||||||| ||||||| Sbjct 398 GCAGCCCCCTCAGGTGTGGGATCTCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCA 457 Query 2904 GATGCAGGCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCC 2963 || | | ||||||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 458 GACAATAACGAAGGTGCCGATGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCC 517 Query 2964 CAATGGCTGGAAAACGGAGTCGTC 2987 |||||||||| || ||||| || Sbjct 518 CAATGGCTGGGGGACAGAGTCATC 541 >seq9897 Length=937 Score = 134 bits (148), Expect = 4e-28 Identities = 174/238 (73%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 3354 CCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTA-CTGCACGCTAAACTA 3412 ||||||||||||||||| | | || ||| || ||||||||||| ||| ||||| || | Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTG-ACGCTTAATGA 879 Query 3413 CAACAACGAGGCGGTGGATCGTTCGGCCTTCTACTGTCTGGACTACTTTCCCTCAGACAT 3472 | | |||| |||| ||||||| |||| ||||| ||||| || || || || | || Sbjct 878 TGGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAAT 819 Query 3473 GCTGCGGACAGGAAATAACTTTGAGTTTACTTACACCTTCGAGGACGTTCCTTTCCATAG 3532 ||| | || || || ||||| |||| | ||| || ||| |||| ||||||||||| Sbjct 818 GCTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAG 759 Query 3533 CATGTTTGCCCACAACCAGACGCTAGACCGGCTGATGAATCCCCTCGTGGATCAGTAC 3590 || | || |||| ||| | || ||||| || |||||||| ||| | || || ||| Sbjct 758 CAGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATAC 701 Score = 120 bits (132), Expect = 9e-24 Identities = 161/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 4074 CTTCCCGGGATGGTGTGGCAAAACAGAGACATTTACCCTACAGGGACCCATTTGG-CCAA 4132 ||||| || ||||| ||||| ||||||| | |||| | || |||||||||||| |||| Sbjct 216 CTTCCGGGTATGGTTTGGCAGGACAGAGATGTGTACC-TGCAAGGACCCATTTGGGCCAA 158 Query 4133 AATTCCCGACACTGACAATCACTTCCATCCGTCCCCGCTTATTGGGCGGTTTGGCTGCAA 4192 |||||| |||| ||| |||| || || || ||||| || || ||||||| || Sbjct 157 AATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTTGGAATGAA 98 Query 4193 GCATCCCCCTCCCCAGATTTTCATTAAAAACACACCCGTCCCTGCCAACCCTTCGGAAAC 4252 ||| || ||||| ||||| |||| ||||||||||| || ||||| | ||| | ||| Sbjct 97 GCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATCCTCC---AAC 41 Query 4253 G---TTCCAGACGGCCAAAGTGGCCTCCTTCATCAACCAG 4289 | ||| | | || ||| || ||| ||||||| |||| Sbjct 40 GGCCTTCAACAAGGACAAGCTGAACTCTTTCATCACCCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14882783305380