Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq8418 176 1e-40 seq9897 172 2e-39 >seq8418 Length=541 Score = 176 bits (194), Expect = 1e-40 Identities = 175/226 (77%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 2445 CCTACCAGAAACAGCTTGAGGCGGGCGATAACCCTTACCTCAAGTACAACCACGCGGACG 2504 ||||| | | ||||| |||| || || ||||| |||||||||||||||||||| |||| Sbjct 2 CCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGACG 61 Query 2505 CAGAGTTTCAGGAGAAACTCGCTTCTGACACTTCTTTTGGGGGAAACCTTGGGAAGGCTG 2564 | ||||| |||||| ||| || || ||||||||||| ||||| ||| || | Sbjct 62 CCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAG 121 Query 2565 TTTTCCAGGCTAAAAAGAGGATTCTCGAACCTCTTGGCCTGGTTGAGACGCCGGATAAAA 2624 | |||||||| ||||||||| |||| ||||||||||| ||||||||| ||| ||| | Sbjct 122 TCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAGA 181 Query 2625 CGGCGCCTGCGGCAAAAAAGAGGCCTCTAGAGCAGAGTCCTCAAGA 2670 |||| ||| | ||| ||||||||| |||||||| |||||| || Sbjct 182 CGGCTCCT---GGAAAGAAGAGGCCTGTAGAGCAGTCTCCTCAGGA 224 >seq9897 Length=937 Score = 172 bits (190), Expect = 2e-39 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 4022 CCGGGAATGGTGTGGCAGGACAGAGACATTTACTACCAAGGGCCCATTTGGGCCAAAATT 4081 ||||| ||||| |||||||||||||| | ||| ||||| |||||||||||||||||| Sbjct 213 CCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCATTTGGGCCAAAATT 154 Query 4082 CCACACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAAAAGC 4141 || |||||||| || |||||||||| ||||| || || || || |||||| |||| | Sbjct 153 CCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTTGGAATGAAGCAC 94 Query 4142 CCGCCTCCACAAATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTTC 4201 |||||||| || || ||||||||||||| |||||||| || |||| ||||| ||||| Sbjct 93 CCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATCCTCCAACGGCCTTC 34 Query 4202 TCTCCGGCCAGAATCAACAGCTTCATCACCCAG 4234 || || | ||| |||||||||||| Sbjct 33 AACAAGGACAAGCTGAACTCTTTCATCACCCAG 1 Score = 100 bits (110), Expect = 8e-18 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 3375 CCTTCTACTGTCTGGAGTACTTTCCCAGC-CAGATGCTGAGAACCGGAAACAACTTTGAG 3433 |||| ||||| ||||| || |||||| | || ||||| ||||| || |||||||| || Sbjct 852 CCTTTTACTGCCTGGAATA-TTTCCCGTCGCAAATGCTAAGAACGGGTAACAACTTCCAG 794 Query 3434 ATGGTGTACAAGTTTGAAAACGTGCCCTTCCACTCCATGTACGCTCACAGCCAGAGCCTG 3493 | ||| ||||||| ||||| || ||||| || |||||||||||||| |||||| Sbjct 793 TTCAGCTACGAGTTTGAGAACGTACCTTTCCATAGCAGCTACGCTCACAGCCAAAGCCTG 734 Query 3494 GATAGGCTGATGAACCCGCTGCTGGACCAGTACCTGT 3530 || | || ||||| || || | ||||| ||| ||| Sbjct 733 GACCGACTAATGAATCCACTCATCGACCAATACTTGT 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14879588889560