Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq8418 105 2e-19 >seq8418 Length=541 Score = 105 bits (116), Expect = 2e-19 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3086 GGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGA 3145 ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| Sbjct 470 GGTGCCGATGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGG 529 Query 3146 GACACAGTCAT 3156 |||| |||||| Sbjct 530 GACAGAGTCAT 540 Score = 100 bits (110), Expect = 9e-18 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 2705 GCGTACGACCAGCAGCTCAAGGCAGGAGACAACCCCTATATAAAATTTAAGCACGCAGAT 2764 || |||||||||||||||||||| ||||||||||| || | || | || ||||| || Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2765 CAAGAATTTATAGATAATCTGCAAGGTGATACCTCCTTTGGAGGCAACCTCGGAAAAGCC 2824 || || || || ||| ||||| || ||||| ||||||||||| ||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2825 GTATTCCAAGCTaaaaaaaGAATTCTAGAGCCTTTAGGCCTAGTAGAAGAACCTGTAAAC 2884 || ||||| || ||||| || |||| || ||| | || || || || ||| | | || Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2885 ATGGCTCCTGCTAAAAAGAG 2904 | |||||||| || ||||| Sbjct 181 ACGGCTCCTGGAAAGAAGAG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16281937434540