Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq9897 116 1e-22 seq8418 96.9 1e-16 >seq9897 Length=937 Score = 116 bits (128), Expect = 1e-22 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 3794 CCAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATT 3853 || |||||||| ||| | ||||| | ||| | || || || |||||||| |||||| Sbjct 213 CCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCATTTGGGCCAAAATT 154 Query 3854 CCAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACAT 3913 || | || || || | ||||| |||||||| ||||| || |||||| | || || Sbjct 153 CCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTTGGAATGAAGCAC 94 Query 3914 CCTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTC 3973 || || ||| ||| || |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 93 CCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATCCTCCAACGGCCTTC 34 Query 3974 AA 3975 || Sbjct 33 AA 32 >seq8418 Length=541 Score = 96.9 bits (106), Expect = 1e-16 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 2600 ATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAGTGGGT 2659 |||||| |||| || |||| || |||||||| ||||| | || ||||| ||||||||| Sbjct 428 ATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGGAGTGGGT 487 Query 2660 AATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCAT 2712 | |||||| || |||||||||||||| || | ||| |||| ||| ||||| Sbjct 488 AGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14045846360540