Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq8418 179 1e-41 seq9897 104 7e-19 seq12394 96.9 1e-16 >seq8418 Length=541 Score = 179 bits (198), Expect = 1e-41 Identities = 157/195 (81%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 2438 TACAACGAGCAGCTTGAGGCGGGAGACAACCCCTACCTCAAGTACAACCACGCGGACGCC 2497 ||| || ||||||| |||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 4 TACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGACGCC 63 Query 2498 GAGTTTCAGGAGAAGCTCGCCGACGACACATCCTTCGGGGGAAACCTCGGAAAGGCAGTC 2557 ||||| |||||| |||| || || || || || ||||| |||||||| |||||| Sbjct 64 GAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAGTC 123 Query 2558 TTTCAGGCCAAGAAAAGGGTTCTCGAACCTTTTGGCCTGGTTGAAGAGGGTGCTAAGACG 2617 || |||||||| || ||| |||| |||||| |||| |||||||| || | ||||||||| Sbjct 124 TTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAGACG 183 Query 2618 GCCCCTACCGGAAAG 2632 || ||| |||||| Sbjct 184 GCTCCT---GGAAAG 195 Score = 140 bits (154), Expect = 1e-29 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 2760 CCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATA 2819 ||||| || ||||| || ||||||| || | || ||||||| ||| ||| ||||||| Sbjct 405 CCTCAGGTGTGGGATCTCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATA 464 Query 2820 ACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGA 2879 || ||||||||||||||||||| | | |||||||| ||||||||||||||||| ||| Sbjct 465 ACGAAGGTGCCGATGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGC 524 Query 2880 TGGGGGACAGAGTCGTC 2896 |||||||||||||| || Sbjct 525 TGGGGGACAGAGTCATC 541 >seq9897 Length=937 Score = 104 bits (114), Expect = 7e-19 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 3912 TGGCCACCAACAACCAGAGCTCC--ACCACTGCCCCCGCGACCGGCACG-TACAACCTCC 3968 ||||||| ||| ||||||| || | ||| | | | | |||||| | | ||| | Sbjct 281 TGGCCACAAACCACCAGAGTGCCCAAGCACAGGCGCAG--ACCGGCTGGGTTCAAAACCA 224 Query 3969 AGGAAATCGTGCCCGGCAGCGTGTGGATGGAGAGGGACGTGTACCTCCAAGGACCCATCT 4028 ||||| | | || || | || ||| ||| || || |||||||| ||||||||||| | Sbjct 223 AGGAATACTT-CCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCATTT 165 Query 4029 GGGCCAAGATCCCAGAGACGGGGGCGCACTTTCACCCCTCTCCGGCCATGGGCGGATTCG 4088 ||||||| || || | |||| | |||||||||| |||||| ||||| || || | Sbjct 164 GGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGTTTG 105 Query 4089 GACTCAAACACCCACCGCCCATGATGCTCATCAAGAACACGCCTGTGCC 4137 || | || ||||| || || ||| |||||||| ||||| ||||| || Sbjct 104 GAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACC 56 >seq12394 Length=322 Score = 96.9 bits (106), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4184 ACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAAGGAAAAC 4243 |||||||| || || || |||| ||||||||| ||||||||||| ||||||||||| Sbjct 1 ACCCAGTATTCTACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAAC 60 Query 4244 TCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTA 4284 |||| | |||||||| |||||||||||||| |||||| Sbjct 61 AGCAAGCGCTGGAACCCGGAGATCCAGTACACTTCCAACTA 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14716673682740