Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq8418 509 5e-141 seq9897 396 8e-107 seq12394 259 1e-65 >seq8418 Length=541 Score = 509 bits (564), Expect = 5e-141 Identities = 430/540 (80%), Gaps = 49/540 (9%) Strand=Plus/Plus Query 2453 GCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGAC 2512 |||||||||||||||||||| || || ||||| |||||||| ||| |||||||||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2513 GCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCATTTGGGGGCAACCTCGGGCGAGCA 2572 |||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2573 GTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAGGAAGGCGCTAAG 2632 |||||||||||||| ||| || |||| |||||||| |||||||||||||||| |||||| Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2633 ACGGCTCCTGCAAAGAAGAGACCGGTAGAGCCGTCACCTCAGC----------------- 2675 |||||||||| ||||||||| || ||||||| ||| |||||| Sbjct 181 ACGGCTCCTGGAAAGAAGAGGCCTGTAGAGCAGTCTCCTCAGGAACNNNNNNNNNNNNNN 240 Query 2676 ------------------------GT-TCC-------CCCGACTCCTCCACGGGCATCGG 2703 || ||| || ||||||||| |||| || || Sbjct 241 NNNNNNNNNNNGGCCTGTAGAGCAGTCTCCTCAGGAACCGGACTCCTCCGCGGGTATTGG 300 Query 2704 CAAGAAAGGCCAGCAGCCCGCCAGAAAGAGACTCAATTTCGGTCAGACTGGCGACTCAGA 2763 ||| || |||||||| | ||||||||||||||||||||||||||||||| |||| Sbjct 301 CAAATCGGGTGCACAGCCCGCTAAAAAGAGACTCAATTTCGGTCAGACTGGCGACACAGA 360 Query 2764 GTCAGTCCCCGACCCTCAACCTCTCGGAGAACCTCCAGCAGCGCCCTCTAGTGTGGGATC 2823 ||||||||| ||||||||||| ||||||||||||| ||||| ||||| |||||||||| Sbjct 361 GTCAGTCCCAGACCCTCAACCAATCGGAGAACCTCCCGCAGCCCCCTCAGGTGTGGGATC 420 Query 2824 TGGTACAGTGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTGCCGACGG 2883 | |||| ||||| |||| |||||||||||| ||||||||||||||||||||||||| || Sbjct 421 TCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGG 480 Query 2884 AGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCAT 2943 |||||||| | |||| ||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 481 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 >seq9897 Length=937 Score = 396 bits (438), Expect = 8e-107 Identities = 640/907 (71%), Gaps = 33/907 (4%) Strand=Plus/Minus Query 3314 CCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTACCTGACTCTCAACAAT 3373 || |||||||| |||||||| |||||||||||||||||||| || ||||| || || || Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTGACGCTTAATGAT 878 Query 3374 GGCAGTCAGTCTGTGGGACGTTCCTCCTTCTACTGCCTGGAGTACTTCCCCTCTCAGATG 3433 || || ||| | ||||| ||||| ||||| ||||||||||| || ||||| || || ||| Sbjct 877 GGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAATG 818 Query 3434 CTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTTCGAGGACGTGCCTTTCCACAGC 3493 || |||||||| |||||||| ||||||||||| || ||| |||| |||||||| ||| Sbjct 817 CTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAGC 758 Query 3494 AGCTACGCACACAGCCAGAGCCTGGACCGGCTGATGAATCCCCTCATCGACCAGTACTTG 3553 |||||||| |||||||| ||||||||||| || |||||||| ||||||||||| |||||| Sbjct 757 AGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATACTTG 698 Query 3554 TACTACCTGGCCAGAACACAGAGTAAC---CCAGGAGGCACAGCTGGCAATCG-GGAACT 3609 ||||| || | | || | |||| | ||| || | ||| || || | Sbjct 697 TACTATCTCTCAAAGAC---TATTAACGGTTCTGGA--CAGAATCAACAAACGCTAAAAT 643 Query 3610 GCAGTTTTACCAGGGCGGGCCTTCAACTATGGCCGAACAAGCCAAGAATTGGTTACCTGG 3669 |||| | || || | || |||| ||||| | || | | || | ||||||| Sbjct 642 TCAGTGTGGCC-GGAC---CCAGCAAC-ATGGCTGTCCAGGGAAGAAACTACATACCTGG 588 Query 3670 ACCTTGCTTCCGGCAACAAAGAGTCTCCAAAACGCTGGATCAAAACAACAACAGCAACTT 3729 ||| ||| ||| |||||| | ||||| | || || |||||||||||||||| | || Sbjct 587 ACCCAGCTACCGACAACAACGTGTCTCAACCACTGTGACTCAAAACAACAACAGCGAATT 528 Query 3730 TGCTTGGACTGGTGCCACCAAATATCACCTGAACGGCAGAAACTCGTTGGTTAATCCCGG 3789 ||||||| |||| || | | || || || | || ||| | ||||| || Sbjct 527 TGCTTGGCCTGGAGCTTCTTCTTGGGCTCTCAATGGACGTAATAGCTTGATGAATCCTGG 468 Query 3790 CGTCGCCATGGCAACTCACAAGGACGACGAGGACCGCTTTTTCCCATCCAGCGGAGTCCT 3849 || ||||| | ||||| || | |||||||| || || || | ||| | Sbjct 467 ACCTGCTATGGCCAGCCACAAAGAAGGAGAGGACCGTTTCTTTCCTTTGTCTGGATCTTT 408 Query 3850 GATTTTTGGAAAAACTGGAGCAACTA-ACAAAAC-TACAT-TGGAAAATGTGTTAATGAC 3906 |||||||| ||| ||| | | | | ||| | || ||| || || | || || Sbjct 407 AATTTTTGGCAAACAAGGAACTGGAAGAGACAACGTGGATGCGGACAAAGTCATGATAAC 348 Query 3907 AAATGAAGAAGAAATTCGTCCTACTAATCCTGTAGCCACGGAAGAATACGGGATAGT--- 3963 || |||||||||||| ||||||| || ||||| ||||| || || ||| Sbjct 347 CAACGAAGAAGAAATTAAAACTACTAACCCGGTAGCAACGGAGTCCTATGGACAAGTGGC 288 Query 3964 ---CAGCAGCAACTTACAAGCGGCTAATACTGCAGCCCAG----ACACAAGTTG---TCA 4013 || || || || | | | | | | ||| ||| | || | || ||| Sbjct 287 CACNAGTGGCCACAAACCACCAG--AGTGCCCAAGCACAGGCGCAGACCGGCTGGGTTCA 230 Query 4014 ACAACCAGGGAGCCTTACCTGGCATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTC 4073 | ||||| ||| | || || ||||| |||||| || | || ||||||||||| || | Sbjct 229 A-AACCAAGGAATACTTCCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGAC 171 Query 4074 CCATCTGGGCCAAGATTCCTCACACGGATGGCAACTTTCACCCGTCTCCTTTGATGGGCG 4133 |||| |||||||| |||||||||||||| |||||||||||||| ||||| ||||||| | Sbjct 170 CCATTTGGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAG 111 Query 4134 GCTTTGGACTTAAACATCCGCCTCCTCAGATCCTGATCAAGAACACTCCCGTTCCCGCTA 4193 | |||||| | || || ||||||||||||||||| ||||| ||||| || || || || Sbjct 110 GGTTTGGAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGG 51 Query 4194 ATCCTCC 4200 ||||||| Sbjct 50 ATCCTCC 44 >seq12394 Length=322 Score = 259 bits (286), Expect = 1e-65 Identities = 200/238 (84%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 4250 ACCGGACAAGTCAGCGTGGAAATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGG 4309 || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 13 ACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGG 72 Query 4310 AACCCGGAGATTCAGTACACCTCCAACTTTGAAAAGCAGACTGGTGTGGACTTTGCCGTT 4369 ||||||||||| |||||||| ||||||| | | ||| | | ||| || ||||| ||| Sbjct 73 AACCCGGAGATCCAGTACACTTCCAACTATTACAAGTCTAATAATGTTGAATTTGCTGTT 132 Query 4370 GACAGCCAGGGTGTTTACTCTGAGCCTCGCCCTATTGGCACTCGTTACCTCACCCGTAAT 4429 | | | ||||| || ||| || ||||| |||||||| | ||||| || |||||| Sbjct 133 AATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATACCTGACTCGTAAT 192 Query 4430 CTGTAATTGCATGTTAATCAATAAACCGGTTGATTCGTTTCAGTTGAACTTTGGTCTC 4487 |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 193 CTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAACTTTGGTCTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14969032532520