Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq8418 511 1e-141 seq9897 491 1e-135 seq12394 311 2e-81 >seq8418 Length=541 Score = 511 bits (566), Expect = 1e-141 Identities = 431/541 (80%), Gaps = 49/541 (9%) Strand=Plus/Plus Query 2352 GCCTACGACCAGCAGCTGCAGGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGAC 2411 ||||||||||||||||| |||| || ||||| |||||||| ||| |||||||||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 60 Query 2412 GCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 2471 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 61 GCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCA 120 Query 2472 GTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAGGAAGGCGCTAAG 2531 |||||||||||||| ||| || |||| |||||||| |||||||||||||||| |||||| Sbjct 121 GTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAAG 180 Query 2532 ACGGCTCCTGGAAAGAAGAGACCGGTAGAGCCATCACCCCAGC----------------- 2574 |||||||||||||||||||| || ||||||| || || ||| Sbjct 181 ACGGCTCCTGGAAAGAAGAGGCCTGTAGAGCAGTCTCCTCAGGAACNNNNNNNNNNNNNN 240 Query 2575 ----------------GT-------TCTCCA---------GACTCCTCTACGGGCATCGG 2602 || ||||| |||||||| |||| || || Sbjct 241 NNNNNNNNNNNGGCCTGTAGAGCAGTCTCCTCAGGAACCGGACTCCTCCGCGGGTATTGG 300 Query 2603 CAAGAAAGGCCAACAGCCCGCCAGAAAAAGACTCAATTTTGGTCAGACTGGCGACTCAGA 2662 ||| || ||||||||| | ||| ||||||||||| ||||||||||||||| |||| Sbjct 301 CAAATCGGGTGCACAGCCCGCTAAAAAGAGACTCAATTTCGGTCAGACTGGCGACACAGA 360 Query 2663 GTCAGTTCCAGACCCTCAACCTCTCGGAGAACCTCCAGCAGCGCCCTCTGGTGTGGGACC 2722 |||||| |||||||||||||| ||||||||||||| ||||| ||||| ||||||||| | Sbjct 361 GTCAGTCCCAGACCCTCAACCAATCGGAGAACCTCCCGCAGCCCCCTCAGGTGTGGGATC 420 Query 2723 TAATACAATGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGG 2782 | |||||||||| |||| |||||||||||| ||||||||||||||||||| ||||| || Sbjct 421 TCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGG 480 Query 2783 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCAT 2842 ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 481 AGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 Query 2843 C 2843 | Sbjct 541 C 541 >seq9897 Length=937 Score = 491 bits (544), Expect = 1e-135 Identities = 682/946 (72%), Gaps = 27/946 (3%) Strand=Plus/Minus Query 3216 CCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTACCTAACACTCAACAAC 3275 || |||||||| |||||||| ||||||||||| |||||||| || || || || || | Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTGACGCTTAATGAT 878 Query 3276 GGTAGTCAGGCCGTGGGACGCTCCTCCTTCTACTGCCTGGAATACTTTCCTTCGCAGATG 3335 || || ||||||||||| || || ||||| |||||||||||||| || || ||||| ||| Sbjct 877 GGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAATG 818 Query 3336 CTGAGAACCGGCAACAACTTCCAGTTTACTTACACCTTCGAGGACGTGCCTTTCCACAGC 3395 || ||||| || |||||||||||||| | ||| || ||| |||| |||||||| ||| Sbjct 817 CTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAGC 758 Query 3396 AGCTACGCCCACAGCCAGAGCTTGGACCGGCTGATGAATCCTCTGATTGACCAGTACCTG 3455 |||||||| |||||||| ||| ||||||| || |||||||| || || ||||| ||| || Sbjct 757 AGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATACTTG 698 Query 3456 TACTACTTGTCTCGGACTCAAACAACAGGAG-GCACGGCAAATACGCAGACTCTGGGCTT 3514 ||||| | || |||| | ||| | | || | ||| || || || || Sbjct 697 TACTATCTCTCAAAGACT--ATTAACGGTTCTGGACAG--AATCAACAAACGCTAAAATT 642 Query 3515 CAGCCAAGGTGGGCCTAATACAATGGCCAATCAGGCAAAGAACTGGCTGCCAGGACCCTG 3574 ||| | || || | | ||||| |||| || |||| | || |||||| | Sbjct 641 CAGTGTGGCCGGACCCAGCAACATGGCTGTCCAGGGAAGAAACTACATACCTGGACCCAG 582 Query 3575 TTACCGCCAACAACGCGTCTCAACGACAACCGGGCAAAACAACAATAGCAACTTTGCCTG 3634 ||||| |||||||| |||||||| || ||||||||||| ||| | ||||| || Sbjct 581 CTACCGACAACAACGTGTCTCAACCACTGTGACTCAAAACAACAACAGCGAATTTGCTTG 522 Query 3635 GACTGCTGGGACCAAATACCATCTGAATGGAAGAAATTCATTGGCTAATCCTGGCATCGC 3694 | ||| | | | ||| |||||| | ||| ||| |||||||| || Sbjct 521 GCCTGGAGCTTCTTCTTGGGCTCTCAATGGACGTAATAGCTTGATGAATCCTGGACCTGC 462 Query 3695 TATGGCAACACACAAAGACGACGAGGAGCGtttttttCCCAGTAACGGGATCCTGA-TTT 3753 |||||| | |||||||| | ||||| ||||| ||||| | | ||||| | | ||| Sbjct 461 TATGGCCAGCCACAAAGAAGGAGAGGACCGTTTCTTTCCTT-TGTCTGGATCTTTAATTT 403 Query 3754 TTGGCAAACAAAATGCTGCCAGAGACAATGCGGATTACAGCGATGTCATGCTCACCAGCG 3813 ||||||||||| ||| |||||||| | |||| | | |||||| | |||| || Sbjct 402 TTGGCAAACAAGGAACTGGAAGAGACAACGTGGATGCGGACAAAGTCATGATAACCAACG 343 Query 3814 AGGAAGAAATCAAAACCACTAACCCTGTGGCTACAGAGGAATACGGTATCGTGGCAGATA 3873 | |||||||| ||||| |||||||| || || || ||| || || ||||| Sbjct 342 AAGAAGAAATTAAAACTACTAACCCGGTAGCAACGGAGTCCTATGGACAAGTGGCC---- 287 Query 3874 ACTTGCAGCAGCAAAACAC--GGCTCCTCAA----ATTGGAA------CTG---TCAACA 3918 || | || |||| ||| | | | ||| | | | ||| |||| | Sbjct 286 ACNAGTGGCCACAAACCACCAGAGTGCCCAAGCACAGGCGCAGACCGGCTGGGTTCAAAA 227 Query 3919 GCCAGGGGGCCTTACCCGGTATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCA 3978 | ||| ||| || |||||||| |||||| || | || ||||||||||| || |||| Sbjct 226 CCAAGGAATACTT-CCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAGGACCCA 168 Query 3979 TCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCACCCGTCTCCGCTGATGGGCGGCT 4038 | |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || | Sbjct 167 TTTGGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGGGAGGGT 108 Query 4039 TTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAACACGCCTGTACCTGCGGATC 4098 |||| |||| || || || ||||||||||| ||||| ||||| |||||||||||||||| Sbjct 107 TTGGAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTGCGGATC 48 Query 4099 CTCCGACCACCTTCAACCAGTCAAAGCTGAACTCTTTCATCACGCA 4144 |||| || |||||||| || |||||||||||||||||||| || Sbjct 47 CTCCAACGGCCTTCAACAAGGACAAGCTGAACTCTTTCATCACCCA 2 >seq12394 Length=322 Score = 311 bits (344), Expect = 2e-81 Identities = 214/242 (88%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 4152 ACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGG 4211 || || || ||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 13 ACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGG 72 Query 4212 AACCCCGAGATCCAGTACACCTCCAACTACTACAAATCTACAAGTGTGGACTTTGCTGTT 4271 ||||| |||||||||||||| |||||||| ||||| |||| | ||| || ||||||||| Sbjct 73 AACCCGGAGATCCAGTACACTTCCAACTATTACAAGTCTAATAATGTTGAATTTGCTGTT 132 Query 4272 AATACAGAAGGCGTGTACTCTGAACCCCGCCCCATTGGCACCCGTTACCTCACCCGTAAT 4331 ||||| ||||| || || |||||||||||||||||||||| | ||||| || |||||| Sbjct 133 AATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATACCTGACTCGTAAT 192 Query 4332 CTGTAATTGCCTGTTAATCAATAAACCGGTTGATTCGTTTCAGTTGAACTTTGGTCTCTG 4391 |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 193 CTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAACTTTGGTCTCTG 252 Query 4392 CG 4393 || Sbjct 253 CG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13921264143560