Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq9897 145 2e-31 seq8418 122 3e-24 >seq9897 Length=937 Score = 145 bits (160), Expect = 2e-31 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 3342 CCGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTA-CTGCACGCTAAACTA 3400 ||||||||||||||||| | | || ||| || ||||| || || ||| ||||| || | Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTG-ACGCTTAATGA 879 Query 3401 CAACAACGAGGCGGTGGATCGTTCGGCCTTCTACTGTCTAGACTATTTCCCCTCAGACAT 3460 | | |||| |||| ||||||| |||| ||||| || || |||||||| || | || Sbjct 878 TGGAAGCCAGGCCGTGGGTCGTTCGTCCTTTTACTGCCTGGAATATTTCCCGTCGCAAAT 819 Query 3461 GCTGCGGACAGGAAATAACTTTGAATTCACTTACACGTTCGAGGACGTTCCTTTCCATAG 3520 ||| | || || || ||||| | |||| ||| ||| ||| |||| ||||||||||| Sbjct 818 GCTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTTTGAGAACGTACCTTTCCATAG 759 Query 3521 CATGTTTGCTCACAACCAGACGCTAGACCGGCTGATGAATCCTCTCGTCGATCAGTACCT 3580 || | ||||||| ||| | || ||||| || |||||||| ||| |||| || ||| | Sbjct 758 CAGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAATCCACTCATCGACCAATACTT 699 Query 3581 GT 3582 || Sbjct 698 GT 697 Score = 143 bits (158), Expect = 8e-31 Identities = 175/236 (74%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 4045 TCAACAACCAAGGGGCGCTTCCCGGGATGGTGTGGCAAAACAGAGACATTTACCTCCAAG 4104 |||| |||||||| ||||| || ||||| ||||| ||||||| | ||||| |||| Sbjct 232 TCAA-AACCAAGGAATACTTCCGGGTATGGTTTGGCAGGACAGAGATGTGTACCTGCAAG 174 Query 4105 GACCCATTTGGGCCAAAATCCCCGACACAGACAATCACTTCCATCCGTCCCCGCTTATTG 4164 ||||||||||||||||||| || |||| ||| |||| || || || ||||| || | Sbjct 173 GACCCATTTGGGCCAAAATTCCTCACACGGACGGCAACTTTCACCCTTCTCCGCTGATGG 114 Query 4165 GCGGGTTTGGCTGCAAGCATCCCCCTCCCCAGATTTTCATTAAAAACACACCCGTCCCGG 4224 | |||||||| ||||| || ||||| ||||| |||| ||||||||||| || || | Sbjct 113 GAGGGTTTGGAATGAAGCACCCGCCTCCTCAGATCCTCATCAAAAACACACCTGTACCTG 54 Query 4225 CCAACCCTTCGGAAACG---TTCCAGACGGCCAAGGTGGCCTCCTTCATCAACCAG 4277 | | ||| | |||| ||| | | || |||| || ||| ||||||| |||| Sbjct 53 CGGATCCTCC---AACGGCCTTCAACAAGGACAAGCTGAACTCTTTCATCACCCAG 1 >seq8418 Length=541 Score = 122 bits (134), Expect = 3e-24 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 2511 GCTTACGACCTCGAACTCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGAT 2570 || ||||||| | ||||||| ||| ||||||||||| | |||||||| | ||||| Sbjct 1 GCCTACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGA- 59 Query 2571 AGACG-TTTCCAGGAACGTCTCAAAGACGATACCTCTTTCGGAGGGAATCTCGGTAAAGC 2629 | || |||||||| || |||||||| ||||| ||||| || || || ||||| ||| Sbjct 60 CGCCGAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGC 119 Query 2630 CATCTTTCAGGCCAAAAAGAGGGTCCTCGAGCCCTTTGGTCTGATTGAACAACCCGACAA 2689 |||| ||||||||||||||| | || || || |||||||| |||| || | | || Sbjct 120 AGTCTTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAGCGGCTAA 179 Query 2690 CACGGC 2695 ||||| Sbjct 180 GACGGC 185 Score = 118 bits (130), Expect = 3e-23 Identities = 111/139 (80%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 2835 GCCCCCTCTAGTGTGGGATCATCTGTCA-TGGCTGAAGGAGGTGGCGGTCCAATGGGCGA 2893 |||||||| |||||||||| ||| || ||||| ||| ||||||| ||| ||| || Sbjct 401 GCCCCCTCAGGTGTGGGATC-TCTTACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGA 459 Query 2894 TGCAGGCCAAGGTGCCGACGGAGTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCA 2953 | |||||||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct 460 CAATAACGAAGGTGCCGATGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCA 519 Query 2954 ATGGCTGGACAACGGAGTC 2972 |||||||| || ||||| Sbjct 520 ATGGCTGGGGGACAGAGTC 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14844450315540