Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006358.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq154006 78.8 2e-11 seq124724 78.8 2e-11 seq118076 78.8 2e-11 seq100414 78.8 2e-11 seq94908 78.8 2e-11 seq87044 78.8 2e-11 >seq154006 Length=59937 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 54586 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 54527 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 54526 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 54467 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 54466 GCTTGGCCCCTCCAGTAT 54449 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 56060 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 56001 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 56000 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 55941 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 55940 GCTTGGCCCCTCCAGTAT 55923 >seq124724 Length=750 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 524 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 465 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 464 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 405 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 404 GCTTGGCCCCTCCAGTAT 387 >seq118076 Length=24012 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 1008 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 949 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 948 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 889 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 888 GCTTGGCCCCTCCAGTAT 871 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 5329 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 5270 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 5269 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 5210 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 5209 GCTTGGCCCCTCCAGTAT 5192 >seq100414 Length=7639 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 3180 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 3239 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 3240 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 3299 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 3300 GCTTGGCCCCTCCAGTAT 3317 Score = 77.0 bits (84), Expect = 6e-11 Identities = 101/140 (72%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 7386 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 7445 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||| ||||| Sbjct 7446 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCGGTTCT 7505 Query 1866 GGATGGGCCTTCGATTATTA 1885 | ||| || || | ||||| Sbjct 7506 GCTTGGCCCCTCCAGTATTA 7525 >seq94908 Length=4717 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 4311 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 4252 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 4251 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 4192 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 4191 GCTTGGCCCCTCCAGTAT 4174 >seq87044 Length=4357 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1746 TACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTAAGATCCAA 1805 || |||||||||||||||||| ||||||| || || ||||| ||| ||| || Sbjct 2734 TATGTCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAA 2675 Query 1806 ATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTACCTGTTCT 1865 ||| |||| | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 2674 ATGACCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCT 2615 Query 1866 GGATGGGCCTTCGATTAT 1883 | ||| || || | ||| Sbjct 2614 GCTTGGCCCCTCCAGTAT 2597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8593407739920