Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_010648.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq119080 84.2 4e-13 seq118076 82.4 1e-12 seq154006 78.8 2e-11 seq115933 78.8 2e-11 seq104008 78.8 2e-11 seq100414 78.8 2e-11 seq96245 78.8 2e-11 seq94908 78.8 2e-11 seq87523 78.8 2e-11 seq87044 78.8 2e-11 seq82408 78.8 2e-11 seq80753 78.8 2e-11 seq98547 77.0 5e-11 >seq119080 Length=695 Score = 84.2 bits (92), Expect = 4e-13 Identities = 116/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 437 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTAAAA 379 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| || | | | | || Sbjct 378 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATATCCTTATTGATCCAG 321 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 320 -TTCACACACGTGGCGTCCATCCGTTATAATATT 288 >seq118076 Length=24012 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/155 (76%), Gaps = 11/155 (7%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAG-GTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC-- 2500 |||||||||||||| ||| || | ||| |||||||| || ||| | |||| | | Sbjct 10111 TGGCATATTTGTAA-TAAGAGTGATGT-CTCCGAATCAGAGCTCCCTTCAACTTGGTGAA 10054 Query 2501 -TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGA 2558 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | | Sbjct 10053 ATG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCA 9996 Query 2559 GATTCACACACGTGGCGGCCATCCGATATAATATT 2593 | ||||||||||||| ||||||||| ||||||||| Sbjct 9995 G-TTCACACACGTGGAGGCCATCCGTTATAATATT 9962 Score = 82.4 bits (90), Expect = 1e-12 Identities = 117/156 (75%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 2443 GATGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC- 2500 |||||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 23246 GATGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGA 23188 Query 2501 --TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCG 2557 || ||||||| || |||||| | || |||||||||||||| ||| | | | | | Sbjct 23187 AATG-AATTGGA-TACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCC 23130 Query 2558 AGATTCACACACGTGGCGGCCATCCGATATAATATT 2593 || ||||||||||||||| ||||||| ||||||||| Sbjct 23129 AG-TTCACACACGTGGCGTCCATCCGTTATAATATT 23095 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 1682 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 1624 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 1623 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 1566 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 1565 -TTCACACACGTGGCGTCCATCCGTTATAATATT 1533 >seq154006 Length=59937 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 55262 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 55204 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 55203 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 55146 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 55145 -TTCACACACGTGGCGTCCATCCGTTATAATATT 55113 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 56731 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 56673 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 56672 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 56615 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 56614 -TTCACACACGTGGCGTCCATCCGTTATAATATT 56582 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 58836 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 58778 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 58777 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 58720 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 58719 -TTCACACACGTGGCGTCCATCCGTTATAATATT 58687 >seq115933 Length=1065 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 369 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAACTCCCTTCAACTTGGTGAAA 427 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 428 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 485 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 486 -TTCACACACGTGGCGTCCATCCGTTATAATATT 518 >seq104008 Length=3583 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 1889 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 1831 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 1830 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 1773 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 1772 -TTCACACACGTGGCGTCCATCCGTTATAATATT 1740 >seq100414 Length=7639 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 2509 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 2567 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 2568 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 2625 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 2626 -TTCACACACGTGGCGTCCATCCGTTATAATATT 2658 >seq96245 Length=3676 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 1925 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 1983 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 1984 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 2041 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 2042 -TTCACACACGTGGCGTCCATCCGTTATAATATT 2074 >seq94908 Length=4717 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 3700 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 3642 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 3641 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 3584 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 3583 -TTCACACACGTGGCGTCCATCCGTTATAATATT 3551 >seq87523 Length=1929 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 1594 TGGCATATTTGTAA-TAAGAGTGAGGCCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 1536 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 1535 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 1478 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 1477 -TTCACACACGTGGCGTCCATCCGTTATAATATT 1445 >seq87044 Length=4357 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 3410 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 3352 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 3351 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 3294 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 3293 -TTCACACACGTGGCGTCCATCCGTTATAATATT 3261 >seq82408 Length=6188 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 724 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 666 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 665 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 608 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 607 -TTCACACACGTGGCGTCCATCCGTTATAATATT 575 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 2042 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 1984 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 1983 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 1926 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 1925 -TTCACACACGTGGCGTCCATCCGTTATAATATT 1893 >seq80753 Length=2195 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 2445 TGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC--- 2500 |||||||||||||| ||| || | |||||||| || ||| | |||| | | Sbjct 2105 TGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTGAAA 2047 Query 2501 TGCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCGAG 2559 || |||||||| | |||||| | || |||||||||||||| ||| | | | | | || Sbjct 2046 TG-AATTGGAG-ACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATTGATCCAG 1989 Query 2560 ATTCACACACGTGGCGGCCATCCGATATAATATT 2593 ||||||||||||||| ||||||| ||||||||| Sbjct 1988 -TTCACACACGTGGCGTCCATCCGTTATAATATT 1956 >seq98547 Length=1803 Score = 77.0 bits (84), Expect = 5e-11 Identities = 115/156 (74%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 2442 TGATGGCATATTTGTAAATAAAAGGTTGTACTCCGAATGAGCTCTCGCAA-AACTCGCTC 2500 || |||||||||||||| ||| || | | |||||||| || ||| | |||| | | Sbjct 901 TGGTGGCATATTTGTAA-TAAGAGTTAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTG 843 Query 2501 T--GCAATTGGAGTATTGGAGTGCAATTTATACTAGAACCCTCAATCTCGCGAAT-AGCG 2557 | |||||||| | |||||| | || ||||||| | |||| ||| | | | | | Sbjct 842 AAAGGAATTGGAG-ACTGGAGTACCATATATACTAAATCCCTTAATAGCCTTATTGATCC 784 Query 2558 AGATTCACACACGTGGCGGCCATCCGATATAATATT 2593 || ||||||||||||||| ||||||| ||||||||| Sbjct 783 AG-TTCACACACGTGGCGTCCATCCGTTATAATATT 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8174918366712