Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_012553.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq124188 77.0 5e-11 seq87044 77.0 5e-11 >seq124188 Length=818 Score = 77.0 bits (84), Expect = 5e-11 Identities = 108/152 (71%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1716 TCATCAATGACGTTATACTCAACGTCATTTGAGTAAACCCTAGAATTGAAATCGAGATGC 1775 ||||||||||||||||| || | ||| || ||| | | ||| ||||| | ||| Sbjct 466 TCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAAATGA 407 Query 1776 CCACTAAGATAATTATGTGGGCCTAAAGCTCTAGCCCACATGGTCTTTCCCGTTCGACTA 1835 ||||||| |||||||||| |||||| | ||| ||||| ||||| || |||| || Sbjct 406 CCACTAATATAATTATGTACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCTGCTT 347 Query 1836 TCCCCCTCGACTACAATACTAATAGGTCTCTC 1867 |||||| | || | ||| | ||||| || Sbjct 346 GGCCCCTCCAGTATCAGACTCAATGGTCTGTC 315 >seq87044 Length=4357 Score = 77.0 bits (84), Expect = 5e-11 Identities = 108/152 (71%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1716 TCATCAATGACGTTATACTCAACGTCATTTGAGTAAACCCTAGAATTGAAATCGAGATGC 1775 ||||||||||||||||| || | ||| || ||| | | ||| ||||| | ||| Sbjct 4017 TCATCAATGACGTTATAAGTTACATTATTGGAATAAGATTTTGCATTAAAATCTAAATGA 3958 Query 1776 CCACTAAGATAATTATGTGGGCCTAAAGCTCTAGCCCACATGGTCTTTCCCGTTCGACTA 1835 ||||||| ||||||||| |||||| | ||| ||||| ||||| || |||| ||| Sbjct 3957 CCACTAATATAATTATGAACGCCTAATGATCTGGCCCAAGCAGTCTTACCTGTTCTACTT 3898 Query 1836 TCCCCCTCGACTACAATACTAATAGGTCTCTC 1867 |||||| | || | ||| | ||||| || Sbjct 3897 GGCCCCTCTAGTATCAGACTCAATGGTCTGTC 3866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8226031572600