Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_014067.1 Length=2582 Score E Sequences producing significant alignments: (Bits) Value seq118076 86.0 1e-13 seq154006 77.0 5e-11 seq119080 77.0 5e-11 seq104008 77.0 5e-11 seq96245 77.0 5e-11 seq94908 77.0 5e-11 seq87044 77.0 5e-11 seq82408 77.0 5e-11 seq80753 77.0 5e-11 seq77810 77.0 5e-11 seq77743 77.0 5e-11 >seq118076 Length=24012 Score = 86.0 bits (94), Expect = 1e-13 Identities = 120/160 (75%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAGTG-TGTACCAATT-GAGCTCTCTCTAAACT 2492 ||| ||||||||||||||||| |||||| | | | | | ||| |||||| || | |||| Sbjct 3164 TAGACGGTGGCATATTTGTAA-TAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 3107 Query 2493 TAGC-AAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||||||||||||| |||| | Sbjct 3106 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATAGTAGAACCCTTATTAGCCTTATT 3048 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 3047 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 3008 Score = 82.4 bits (90), Expect = 1e-12 Identities = 119/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | ||| | | ||| |||||| || | |||| Sbjct 10118 TAGACGGTGGCATATTTGT-AATAAGAGTGATGTCTCCGAATCAGAGCTCCCT-TCAACT 10061 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 10060 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 10002 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||| ||||||||| ||||||||| Sbjct 10001 GATCCAGTTCACACACGTGGAGGCCATCCGTTATAATATT 9962 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 1689 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 1632 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 1631 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 1573 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 1572 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1533 >seq154006 Length=59937 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 55269 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 55212 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 55211 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 55153 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 55152 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 55113 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 56738 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 56681 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 56680 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 56622 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 56621 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 56582 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 58843 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 58786 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 58785 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 58727 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 58726 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 58687 >seq119080 Length=695 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 444 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 387 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 386 TGGTAAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATATCCTTATT 328 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 327 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 288 >seq104008 Length=3583 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 1896 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 1839 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 1838 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 1780 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 1779 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1740 >seq96245 Length=3676 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Plus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 1918 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 1975 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 1976 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 2034 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 2035 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 2074 >seq94908 Length=4717 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 3707 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 3650 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 3649 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 3591 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 3590 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 3551 >seq87044 Length=4357 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 3417 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 3360 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 3359 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 3301 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 3300 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 3261 >seq82408 Length=6188 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 731 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 674 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 673 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 615 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 614 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 575 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 2049 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 1992 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 1991 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 1933 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 1932 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1893 >seq80753 Length=2195 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 2112 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 2055 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 2054 TGGTGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 1996 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 1995 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1956 >seq77810 Length=792 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Plus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAGTGTGTA-CCAATTGAGCTCTCTC-TAAACT 2492 ||| |||| |||||||||| |||||||| | | ||| || | | || |||| | | |||| Sbjct 333 TAGACGGTAGCATATTTGT-AATAAGAGTGAG-GTATCCGAATCAGATCTCCCTTCAACT 390 Query 2493 TAG-CAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 391 TGGTGAAATGAATTGG-ATACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 449 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| ||| |||||||||| ||||||| ||||||||| Sbjct 450 GATCCAGTTGACACACGTGGCGTCCATCCGTTATAATATT 489 >seq77743 Length=3059 Score = 77.0 bits (84), Expect = 5e-11 Identities = 118/160 (74%), Gaps = 15/160 (9%) Strand=Plus/Plus Query 2435 TAGGCGGTGGCATATTTGTAAATAAGAGAG-TGTGTACCAAT-TGAGCTCTCTCTAAACT 2492 ||| ||||||||||||||| |||||||| | || | | ||| |||||| || | |||| Sbjct 1123 TAGACGGTGGCATATTTGT-AATAAGAGTGAGGTCTCCGAATCAGAGCTCCCT-TCAACT 1180 Query 2493 T-AGCAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTA-----ACG 2546 | | ||||||||||| | || || || ||||||| ||||||||| | || | Sbjct 1181 TAATGAAATGAATTGG-AGACTGGAGTACCATATATACTAGAACCCTTAATAGCCTTATT 1239 Query 2547 GAT----TTGCAACACGTGGCGGCCATCCGCTATAATATT 2582 ||| || |||||||||| ||||||| ||||||||| Sbjct 1240 GATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8139778037664