Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq12394 156 1e-34 seq9897 123 7e-25 seq8418 98.7 3e-17 >seq12394 Length=322 Score = 156 bits (172), Expect = 1e-34 Identities = 190/258 (74%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 4036 ACGCAGTACTCCACCGGCCAGGTCACCGTCGAGATCGAGTGGGAGCTGCGCAAGGAGAAG 4095 || ||||| || || ||||| |||| ||| ||||||||||||||||||| ||||| || Sbjct 1 ACCCAGTATTCTACTGGCCAAGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAAC 60 Query 4096 AGCAAGCGCTGGAACCCCGAGATCCAGTACACCTCCAACTTCGAGAACTCGGCCAACGTA 4155 ||||||||||||||||| |||||||||||||| ||||||| | || || || || Sbjct 61 AGCAAGCGCTGGAACCCGGAGATCCAGTACACTTCCAACTATTACAAGTCTAATAATGTT 120 Query 4156 CAGTTCTCCGTCAACGGCGACGGCGCGTACATCGAGCCGCGACCGATCGGAACCCGGTAC 4215 | || | || || || || | || | || || || || || || ||| | ||| Sbjct 121 GAATTTGCTGTTAATACTGAAGGTGTATATAGTGAACCCCGCCCCATTGGCACCAGATAC 180 Query 4216 CTCACCCACAACCTGTAA------ATAAATCCCCCAATAAACCGTGT-ATTCGTTTCAGT 4268 || || | || |||||| | ||| ||||||||||| | |||||||||||| Sbjct 181 CTGACTCGTAATCTGTAATTGCTTGTTAAT----CAATAAACCGTTTAATTCGTTTCAGT 236 Query 4269 TGAACTTTGGTCTCTGCG 4286 |||||||||||||||||| Sbjct 237 TGAACTTTGGTCTCTGCG 254 >seq9897 Length=937 Score = 123 bits (136), Expect = 7e-25 Identities = 182/259 (70%), Gaps = 23/259 (9%) Strand=Plus/Minus Query 3109 CCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTACCTGACGCTCAACGCC 3168 ||||||||||| |||||||| |||||| | || ||||||| ||| |||||||| || | Sbjct 937 CCGCCGTTCCCAGCGGACGTTTTCATGATTCCTCAGTACGGGTATCTGACGCTTAATGAT 878 Query 3169 AACCCCACGAA-CCAGGGCGCGGCCGCGCTCAGCCTGCCGCAGAGCGCCTTCTACTGCCT 3227 ||| ||||| || || || || ||| | |||||||| Sbjct 877 G-------GAAGCCAGGCCGTGGGT-CGTTCGTCCT--------------TTTACTGCCT 840 Query 3228 GGAGTACTTTCCGAGCCAGATGCTGAGGACCGGGAACAACTTCTCGTTCAGCTACGAGTT 3287 ||| || || ||| || ||||| || || || ||||||||| ||||||||||||||| Sbjct 839 GGAATATTTCCCGTCGCAAATGCTAAGAACGGGTAACAACTTCCAGTTCAGCTACGAGTT 780 Query 3288 CGAGAAGCTGCCCTTCCACTCGATGTTCATGCACAGCCAGAGCCTGGACCGGCTCATGAA 3347 ||||| | || ||||| | | | |||||||| ||||||||||| || ||||| Sbjct 779 TGAGAACGTACCTTTCCATAGCAGCTACGCTCACAGCCAAAGCCTGGACCGACTAATGAA 720 Query 3348 CCCGCTCATCGACCAGTAC 3366 || ||||||||||| ||| Sbjct 719 TCCACTCATCGACCAATAC 701 >seq8418 Length=541 Score = 98.7 bits (108), Expect = 3e-17 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 2284 TACGACCGGCTCCTCAAGGCGGGGGACAACCCGTACCTCGCCTACAACCACGCGGACGCC 2343 ||||||| || |||||||| || ||||||||||||||| ||||||||||| |||||| Sbjct 4 TACGACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGACGCC 63 Query 2344 GAGTTCCAGAAGGACCTCAGCGGCGACTCCAGCCTAGCCGGCAACGCCGCGAACGCGCTC 2403 ||||||||| || |||| | || | | | |||||| || | || || Sbjct 64 GAGTTCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCAGTC 123 Query 2404 TTCCAGGCCAAGAAGAGGGTCCTCGAGCCCTTCGGACTGGTCGAGGGAG 2452 ||||||||||| |||||| | || || || | || ||||| |||| || Sbjct 124 TTCCAGGCCAAAAAGAGGCTTCTTGAACCTCTTGGTCTGGTTGAGGAAG 172 Score = 98.7 bits (108), Expect = 3e-17 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 2636 TGGCTGCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAGGTGCCGATGGAGTGGGTA 2695 ||||| | |||||||||| |||||||| ||| || ||||||||||||||||||||| Sbjct 429 TGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGGAGTGGGTA 488 Query 2696 ATGCCTCAGGAAATTGGCATTACGATTCC 2724 | |||| ||||||||||||| ||||||| Sbjct 489 GTTCCTCGGGAAATTGGCATTGCGATTCC 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13579461650820