Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_015047.1 Length=2637 Score E Sequences producing significant alignments: (Bits) Value seq87044 78.8 2e-11 seq100414 77.0 5e-11 >seq87044 Length=4357 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/155 (74%), Gaps = 16/155 (10%) Strand=Plus/Minus Query 2497 CGGTGGCATTTTTGTAATAAAGGGTGAG---TACCAATTGGGTCTCACTCAAACTTGGTG 2553 ||||||||| |||||||||| | ||||| | | ||| | ||| || ||||||||| Sbjct 635 CGGTGGCATATTTGTAATAA-GAGTGAGGTCTCCGAATCAGAGCTCCCTTCAACTTGGTG 577 Query 2554 AAATGAATTGGGGAATGGGTCTCAATATATACTAAGAGTCCGT--TAG-CTTA--GAT-- 2606 ||||||||||| || ||| | ||||||||| ||| ||| | ||| |||| ||| Sbjct 576 AAATGAATTGGAGACTGGAGTACCATATATACT-AGAATCCTTAATAGCCTTATTGATCC 518 Query 2607 --TT--GCCACGTGGCGGCCATCCGCTATAATATT 2637 || ||||||||| ||||||| ||||||||| Sbjct 517 AGTTCACACACGTGGCGTCCATCCGTTATAATATT 483 >seq100414 Length=7639 Score = 77.0 bits (84), Expect = 5e-11 Identities = 120/164 (73%), Gaps = 16/164 (10%) Strand=Plus/Plus Query 2488 TTTATTGTGCGGTGGCATTTTTGTAATAAAGGGTGAG---TACCAATTGGGTCTCACTCA 2544 ||| ||| ||||||||| |||||||||| | ||||| | | ||| | ||| || Sbjct 2497 TTTTTTGGACGGTGGCATATTTGTAATAA-GAGTGAGGTCTCCGAATCAGAGCTCCCTTC 2555 Query 2545 AACTTGGTGAAATGAATTGGGGAATGGGTCTCAATATATACTAAGAGTCCGT--TAG-CT 2601 |||||||||||||||||||| || ||| | ||||||||| ||| || | ||| || Sbjct 2556 AACTTGGTGAAATGAATTGGAGACTGGAGTACCATATATACT-AGAACCCTTAATAGCCT 2614 Query 2602 TA--GAT----TT--GCCACGTGGCGGCCATCCGCTATAATATT 2637 || ||| || ||||||||| ||||||| ||||||||| Sbjct 2615 TATTGATCCAGTTCACACACGTGGCGTCCATCCGTTATAATATT 2658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8315479682904