Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq9897 136 1e-28 seq8418 134 4e-28 >seq9897 Length=937 Score = 136 bits (150), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 3881 ACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACT 3940 |||||||| | ||||||||||| ||||| ||||| ||||| || | || || || ||| Sbjct 194 ACAGAGATGTGTACCTGCAAGGACCCATTTGGGCCAAAATTCCTCACACGGACGGCAACT 135 Query 3941 TTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCA 4000 ||||||| ||||| | ||||| || || ||| | || |||| || || |||||||| Sbjct 134 TTCACCCTTCTCCGCTGATGGGAGGGTTTGGAATGAAGCACCCGCCTCCTCAGATCCTCA 75 Query 4001 TCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAA 4043 ||||||||||||| || || || ||||| |||||| ||||||| Sbjct 74 TCAAAAACACACCTGTACCTGCGGATCCTCCAACGGCCTTCAA 32 >seq8418 Length=541 Score = 134 bits (148), Expect = 4e-28 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 2661 TACAATGGCTCAAGGAGGTGGCGGACCAATGGCAGACGATAACCAAGGCGCCGAGGGAGT 2720 |||||||||| ||| ||||||| |||| |||||||| ||||| |||| ||||| ||||| Sbjct 424 TACAATGGCTTCAGGTGGTGGCGCACCAGTGGCAGACAATAACGAAGGTGCCGATGGAGT 483 Query 2721 GGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGTCAT 2777 ||||| | |||||||| |||||||||||||| ||||||||||||| ||| ||||| Sbjct 484 GGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGGGGACAGAGTCAT 540 Score = 78.8 bits (86), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 2324 ACGAGCTTCTCGAGGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGACGCCGTCT 2383 || ||| ||| |||| ||||||||||||||| |||||||||||||||| ||||||| | Sbjct 8 ACCAGCAGCTCAAGGCCGGAGACAACCCGTACCTCAAGTACAACCACGCCGACGCCGAGT 67 Query 2384 TTCAAGAACGCTTGCAAGGAGATACTAGTTTGGGTGGTAAC 2424 | || || || | ||| |||||| ||| || || ||| Sbjct 68 TCCAGGAGCGGCTCAAAGAAGATACGTCTTTTGGGGGCAAC 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14550564060100