Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_027632.1 Length=3442 Score E Sequences producing significant alignments: (Bits) Value seq118 80.6 6e-12 >seq118 Length=757529 Score = 80.6 bits (88), Expect = 6e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 2586 CATCCTTGATTTGTTCAAGGATGTCATAATTTACATAATCTTTACCTGATCTAGTAAAAT 2645 |||| ||||| |||||||| |||||||| || || | || | ||| || || ||| Sbjct 107091 CATCTTTGATCTGTTCAAGAATGTCATAGTTGACGAAGTCATGACCACTCCTGGTGTAAT 107150 Query 2646 CAAAAATAACTATAGTACTATGGGGGTTGCTGCTGAGATGTTCTCT--GAACGCGAATGC 2703 | |||| | || | || | ||||| ||| || |||| | | ||| | | |||| Sbjct 107151 CGAAAACTGCAATGTTGCTGTCTGGGTT-CTG-TGTTATGTGCGCACAGAAGGAGTATGC 107208 Query 2704 AACATCCGGAGTCTTTCCTCCCCTGGTGTAGAAAGCTCCGTGCCTGGCCATGTGCTTCGC 2763 ||| | | ||||||||||||||| | ||| || || |||| | || | |||||| || Sbjct 107209 AACGTTCTCAGTCTTTCCTCCCCTTGAGTAAAATGCACCGTTTCGAGCAAGGTGCTTTGC 107268 Query 2764 GAAAGTTGATTTGCC 2778 || ||||||||||| Sbjct 107269 AAATGTTGATTTGCC 107283 Score = 80.6 bits (88), Expect = 6e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 2586 CATCCTTGATTTGTTCAAGGATGTCATAATTTACATAATCTTTACCTGATCTAGTAAAAT 2645 |||| ||||| |||||||| |||||||| || || | || | ||| || || ||| Sbjct 108363 CATCTTTGATCTGTTCAAGAATGTCATAGTTGACGAAGTCATGACCACTCCTGGTGTAAT 108304 Query 2646 CAAAAATAACTATAGTACTATGGGGGTTGCTGCTGAGATGTTCTCT--GAACGCGAATGC 2703 | |||| | || | || | ||||| ||| || |||| | | ||| | | |||| Sbjct 108303 CGAAAACTGCAATGTTGCTGTCTGGGTT-CTG-TGTTATGTGCGCACAGAAGGAGTATGC 108246 Query 2704 AACATCCGGAGTCTTTCCTCCCCTGGTGTAGAAAGCTCCGTGCCTGGCCATGTGCTTCGC 2763 ||| | | ||||||||||||||| | ||| || || |||| | || | |||||| || Sbjct 108245 AACGTTCTCAGTCTTTCCTCCCCTTGAGTAAAATGCACCGTTTCGAGCAAGGTGCTTTGC 108186 Query 2764 GAAAGTTGATTTGCC 2778 || ||||||||||| Sbjct 108185 AAATGTTGATTTGCC 108171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10901253459325