Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_002048.1 Length=2584 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 3e-14 >seq12 Length=14929429 Score = 87.8 bits (96), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 2169 AGCTCTCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAA 2228 |||||| || ||||| ||||||||||||||| ||| |||||||||| | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2229 TCGTTGA-TTGGTGCACTGGTACTTTCCTTCGAACTGGATGAGAACGTGGAGATGAGGTT 2287 || |||| || ||| | |||| ||| || | | | | || |||||||||| Sbjct 10862458 TCATTGACTTTGTG-TTTCAAACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGGTT 10862516 Query 2288 GCCCATCTTCGTGTAGTTCT 2307 || |||||||||||| ||| Sbjct 10862517 ACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8159782036200